| 2015-04-06 |
Diane Trout | convert non-unit-tested module to use newer raise Exception...
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commit | commitdiff | tree |
| 2015-04-06 |
Diane Trout | convert several not covered by unit-test modules to...
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commit | commitdiff | tree |
| 2015-04-06 |
Diane Trout | Be more careful looking up keys when the fastqname...
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commit | commitdiff | tree |
| 2015-03-31 |
Diane Trout | add post_spreadsheet to create encoded objects from...
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commit | commitdiff | tree |
| 2015-03-31 |
Diane Trout | also validate documents before creating them
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commit | commitdiff | tree |
| 2015-03-31 |
Diane Trout | actually complain if we get the wrong type
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commit | commitdiff | tree |
| 2015-03-31 |
Diane Trout | add a docstring to validate
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commit | commitdiff | tree |
| 2015-03-31 |
Diane Trout | Add get_accession_name to use collection name to find...
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commit | commitdiff | tree |
| 2015-03-31 |
Diane Trout | support trying to figure out object type based on what...
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | Switch encode3 submitter to use aws.
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | Import flowcell details into the triple store from...
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | store flowcell name in the triple store if its known
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | record file size information for a file in the triple...
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | Adjust logging overrides and move django.setup to after...
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | getitem should only return the key
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commit | commitdiff | tree |
| 2015-03-27 |
Diane Trout | clean up a bit of whitespace
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | configure using a local postgres install
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Convert reads to an integer, if if it was a float in...
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Actually comare an integer (length of list) to an integer 0.
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | The empty list is now not found
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Drop library id encoding
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Use regex to make sure scripts end with the right command
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Use six.moves to find urlencode and urlopen
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | filter out None c.times in list of potential times
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | use relative import for submission_test_common
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Try to detect if an object is a file type on python...
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | replace xrange with enumerate
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Use ''.splitlines() instead of split('\n')
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | adapt to python2 returning lists and python3 iterators
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | use sorted on the iterator instead of an in-place sort
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Use max on the iterator to find the last key
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | add more from __future__ import print_function, unicode_literals
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Call print(msg) instead of print msg
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | special case unicode handling that differs between...
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Replace some unicode() with str()
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Use isinstance(object, (types)) pattern instead of...
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | Specify text vs binary mode for opening files.
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | prefer native string types.
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commit | commitdiff | tree |
| 2015-03-20 |
Diane Trout | update more raise exceptions to Exception(message)...
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commit | commitdiff | tree |
| 2015-03-19 |
Diane Trout | Use django.utils.encode smart_text or smart_str for...
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commit | commitdiff | tree |
| 2015-03-18 |
Diane Trout | import urljoin from six.moves.urllib.parse
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commit | commitdiff | tree |
| 2015-03-18 |
Diane Trout | use JsonResponse instead of making a json response...
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commit | commitdiff | tree |
| 2015-03-18 |
Diane Trout | drop support for simplejson. were only caring about...
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commit | commitdiff | tree |
| 2015-03-18 |
Diane Trout | import ConfigParser classes from six.moves.configparser
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commit | commitdiff | tree |
| 2015-03-18 |
Diane Trout | use absolute_import
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commit | commitdiff | tree |
| 2015-02-03 |
Diane Trout | new json code returns [] when there are no lanes
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commit | commitdiff | tree |
| 2015-02-03 |
Diane Trout | convert to unicode_literals
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commit | commitdiff | tree |
| 2015-02-02 |
Diane Trout | take advantage of absolute_import to simplify import...
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commit | commitdiff | tree |
| 2015-02-02 |
Diane Trout | base64.encodestring needs a bytearray in python3
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commit | commitdiff | tree |
| 2015-02-02 |
Diane Trout | Replace elif list() > int() with else
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commit | commitdiff | tree |
| 2015-01-30 |
Diane Trout | properly call usrlib.parse instead of urlparse
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commit | commitdiff | tree |
| 2015-01-30 |
Diane Trout | Convert alphanum sort from comparitor to key operator
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert from failUnlessEqual to assertEqual
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | update srf2fastq detection code to work with byte arrays
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | assume we are writing text with gzip
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | replace iterkeys with python 3 equivalents
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert has_key to X in dictionary
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use six.moves to work around urllib / urllib2 / urlparse...
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove unicode_literals from things going to redland RDF
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove some commented out code
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert some print statements to logger messages
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert to print_function, and start adding unicode_literals...
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | put #!/usr/bin/env python in the right place
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove ,'s from more except blocks, and now a raise too
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | more use six.moves to import StringIO
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use six.moves to get to python3-style urllib
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | whitespace-cleanup
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | remove some commented out code
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | convert to print_function
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use force_text instead of force_unicode for python2...
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | import StringIO from six.moves
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | use six to work around rename of configparser
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commit | commitdiff | tree |
| 2015-01-29 |
Diane Trout | Convert old style except blocks to except Exception...
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commit | commitdiff | tree |
| 2015-01-28 |
Diane Trout | make the search tool more flexible
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commit | commitdiff | tree |
| 2015-01-26 |
Diane Trout | remove unused code
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commit | commitdiff | tree |
| 2015-01-21 |
Diane Trout | Update test_retrieve_config to work with factories
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commit | commitdiff | tree |
| 2015-01-14 |
Diane Trout | fix spelling error in module name
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commit | commitdiff | tree |
| 2015-01-13 |
Diane Trout | Don't pass null authentication information to ENCODED.
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commit | commitdiff | tree |
| 2015-01-13 |
Diane Trout | use absolute_import and print_function
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commit | commitdiff | tree |
| 2015-01-13 |
Diane Trout | Update inventory tests to use factory boy.
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commit | commitdiff | tree |
| 2015-01-12 |
Diane Trout | move the file type test cases out into their own module
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commit | commitdiff | tree |
| 2015-01-12 |
Diane Trout | use migrations for experiments, and use migrations...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | get_schema_url only works on object types now, so change...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | at some point I added code that used base64, hashlib...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Forgot to disable loading ClusterStation and Sequencer...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Convert experiments modules to use factories instead...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Improve samples_factory generated objects.
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | unimportant whitespace changes, at least the lines...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | whitespace changes
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | fix typo -- or at least make it consistent. antigen...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | move cluster station and sequencer tests out into their...
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commit | commitdiff | tree |
| 2015-01-10 |
Diane Trout | Use logger instead of trying to print to stdout. especially...
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commit | commitdiff | tree |
| 2015-01-09 |
Diane Trout | one should only return json objects. so put our arrays...
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | Add document registration class.
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | add more type checking for parsing object type from...
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commit | commitdiff | tree |
| 2014-12-13 |
Diane Trout | add some helpful log messages
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commit | commitdiff | tree |
| 2014-12-01 |
Diane Trout | add ability to adjust some log level messages
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commit | commitdiff | tree |
| 2014-12-01 |
Diane Trout | commit script to copy jumpgate sqlite database to felcat...
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commit | commitdiff | tree |
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