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Mark library & flowcell as a type in RDF.
2011-09-22
Diane Trout
Mark library & flowcell as a type in RDF.
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2011-09-21
Diane Trout
Switch from beautifulsoup to lxml, now that I know...
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2011-09-21
Diane Trout
Rename ucsc submission namespace to be more consistent...
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2011-09-19
Diane Trout
Output samples that don't have index sequence as well.
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2011-09-19
Diane Trout
Python 2.6's DictWriter doesn't have writeheader, so...
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2011-09-17
Diane Trout
Disable csrf protection for the json urls
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2011-09-17
Diane Trout
Add support for tracking the multiplex index sequence.
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2011-09-12
Diane Trout
Add support for first-gen HiSeq flowcells (e.g. ABXX)
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2011-09-08
Diane Trout
Django 1.1's csrf protection appears to be handled...
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2011-09-08
Diane Trout
Add links to the admin page on the public pages if...
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2011-09-08
Diane Trout
Make it so the login link redirects you back to the...
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2011-09-08
Diane Trout
Emacs stripped off trailing whitespace
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2011-09-07
Diane Trout
Add link to admin page to flowcell & library pages...
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2011-09-07
Diane Trout
Remove margin-right command as it was making a giant...
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2011-09-02
Diane Trout
Ignore some files generated by my (diane's) development...
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2011-09-02
Diane Trout
Attempt to download DAF data for a encodesubmit submission
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2011-09-02
Diane Trout
Add error message for requesting link-daf but no daf...
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2011-08-31
Diane Trout
Enable csrf proection when running under Django 1.2
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2011-08-18
Diane Trout
Rescan a flowcell data run once per (setting.RESCAN_DELAY...
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2011-08-08
Diane Trout
Deal with (failed) in flowcell names.
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2011-08-04
Diane Trout
Add a way to browse the list of entered antibody/antigene
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2011-07-29
Diane Trout
Make a test more robust to different versions of librdf
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2011-07-29
Diane Trout
Construct unit tests for inventory/hard disk long term...
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2011-07-28
Brandon W. King
An improvement on the inventory system. Getting it...
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2011-07-28
Diane Trout
Examine the DAF to determine if the DDF needs to include...
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2011-07-20
Diane Trout
Stop copying attributes from library to a submission...
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2011-07-20
Diane Trout
Remove spurious debugging print statement
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2011-07-20
Diane Trout
Add an option to print out an example view to extension...
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2011-07-20
Diane Trout
Make searching library & cell line more robust to missing...
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2011-07-20
Diane Trout
Search for both encode & mouse encode projects.
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2011-07-20
Diane Trout
Update old dt-overrides.turtle example to use the newer...
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2011-07-13
Diane Trout
Make antibody catalog number optional for creating...
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2011-07-13
Diane Trout
Make sure we can roundtrip unicode characters via converting...
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2011-07-09
Diane Trout
Add "Count of multi-reads" back into the library page
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2011-07-07
Diane Trout
Don't use xsd:string for string data types in toTypedNode
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2011-07-07
Diane Trout
Library urls have a trailing /. make sure the test...
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2011-07-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-07-07
Diane Trout
Fix namespace issues in encode_find after the conversion
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2011-07-06
Diane Trout
Add some additional logging to util/rdflib.py to help...
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2011-07-01
Diane Trout
Make sure that the lane set is sorted on the flowcell...
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2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-30
Diane Trout
The proper DDF variable name for files to be submitted...
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2011-06-30
Diane Trout
Older librdf gets cranky when mixing unicode & strings
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2011-06-30
Diane Trout
Django 1.1 doesn't support validators so remove it...
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2011-06-30
Diane Trout
Fix typo in a template
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2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-30
Diane Trout
switch fix_ob3 to the better way of finding settings...
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2011-06-29
Diane Trout
Further clean up ddf generation.
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2011-06-28
Diane Trout
Start supporting multiple libraries per lane, as needed...
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2011-06-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-22
Diane Trout
Slightly alter some tests to work with versions of...
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2011-06-22
Diane Trout
Move parse_flowcell_id out of frontend.samples.results
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2011-06-22
Diane Trout
allow running ucsc_gather --fastq without specifying...
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2011-06-21
Diane Trout
Finish new RDF based ddf construction.
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2011-06-18
Diane Trout
Rework ucsc gather to use RDF models for gathering...
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2011-06-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-18
Diane Trout
Include the library_id in addition to the RDFa library uri
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2011-06-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-17
Diane Trout
Minor RDFa fixes.
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2011-06-15
Diane Trout
Start to move all the RDF namespace definitions into...
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2011-06-15
Diane Trout
Add module to parse UCSC DAF file.
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2011-06-15
Diane Trout
Move code to make srf and qseq to fastq condor scripts...
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2011-06-15
Diane Trout
Sample Test RDFA needed the flowcell id field
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2011-06-15
Diane Trout
Remove some uneeded linefeeds
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2011-06-14
Diane Trout
Fix a template typo
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2011-06-13
Diane Trout
Supprose IVC plot table rows if we don't have data...
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2011-06-13
Diane Trout
Follow the flowcell link from the library page.
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2011-06-13
Diane Trout
The get_permanent_link function on the flowcell model...
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2011-06-13
Diane Trout
Remove some now unnecessary coments and reformat some...
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2011-06-11
Diane Trout
python's 2.6 uuid function doesn't cast to a string...
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2011-06-11
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-11
Diane Trout
Convert Rami's DataRun feature to something useful...
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2011-06-10
Brandon W. King
The srf/qseq --raw-format patch.
Signed-off-by:
Diane Trout
<diane@caltech.edu>
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2011-06-09
Diane Trout
Move test srf files to testdata directory so I can...
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2011-06-09
Diane Trout
Add a method to return the runfolder name.
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2011-05-27
Diane Trout
Add in test code to verify RDF data being added to...
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2011-05-27
Diane Trout
Trivial change, add human to common name of "homo sapiens"
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2011-05-26
Lorian Schaeffer
Add feature to manage and print labels.
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2011-05-26
Diane Trout
Merge branch 'add-condition'
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2011-05-25
Diane Trout
Make antibody & condition visible.
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2011-05-18
Diane Trout
Write the librdf model database somewhere other than...
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2011-05-16
Diane Trout
Pretty print the json files to help debugging
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2011-05-16
Diane Trout
Allow configuring additional database settings so we...
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2011-05-09
Diane Trout
Add fake settings.py file point to the real htsworkflow...
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2011-05-09
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-05-09
Diane Trout
Move default_pm setting to a little more predictable...
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2011-05-09
Diane Trout
Keep moving settings around until I can find a place...
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2011-05-09
Diane Trout
Add utility program to help find what exists in georgi...
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2011-05-09
Diane Trout
Report missing directory names to help diagnose sequence...
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2011-05-09
Diane Trout
Validate fastq files in both phred33 & phred64 versions
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2011-04-18
Diane Trout
Be more flexible with fastq filenames.
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2011-04-06
Diane Trout
django-nose didn't work with django 1.1, so I went...
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2011-04-05
Diane Trout
Adjust django driver script to test the whole package.
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2011-04-05
Diane Trout
Revert a bad change. Apparently past me knew what I...
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2011-04-05
Diane Trout
remove spurious debugging print
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2011-04-02
Diane Trout
Remove spurious debug print statements
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2011-04-02
Diane Trout
Fix a typo inserted into the template.
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2011-04-02
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-04-02
Diane Trout
Add pages to show information about a particular flowcell.
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2011-03-30
Diane Trout
Update single vs paired guessing code
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