woldlab.caltech.edu Git - htsworkflow.git/search

2015-12-03	Diane Trout	report run_type	commit \| commitdiff \| tree
2015-12-03	Diane Trout	report if a flowcell was single or paired ended as...	commit \| commitdiff \| tree
2015-12-03	Diane Trout	remove unused imports and variables	commit \| commitdiff \| tree
2015-11-30	Diane Trout	make a more informative log message	commit \| commitdiff \| tree
2015-11-30	Diane Trout	Read the first sequence out of the fastq to find the...	commit \| commitdiff \| tree
2015-11-30	Diane Trout	refactor encode3 spreadsheet based object creation...	commit \| commitdiff \| tree
2015-11-30	Diane Trout	remove wsgiref requirement	commit \| commitdiff \| tree
2015-11-11	Diane Trout	argparse is in versions of python we care about	commit \| commitdiff \| tree
2015-10-27	Diane Trout	use decorator syntax for registering admin urls	commit \| commitdiff \| tree
2015-10-27	Diane Trout	update dotted path for python3	commit \| commitdiff \| tree
2015-10-27	Diane Trout	update url to new standard url	commit \| commitdiff \| tree
2015-10-27	Diane Trout	Update schema tests for upstreams release 33	commit \| commitdiff \| tree
2015-10-27	Diane Trout	make exception dotted name python3 compliant	commit \| commitdiff \| tree
2015-10-20	Diane Trout	this works better with python 3...	commit \| commitdiff \| tree
2015-10-20	Diane Trout	apparently json.dump can write to a stream	commit \| commitdiff \| tree
2015-10-20	Diane Trout	Add mode to connect to the DCC and make sure the files...	commit \| commitdiff \| tree
2015-10-20	Diane Trout	fix import path for HTTPError exception	commit \| commitdiff \| tree
2015-10-20	Diane Trout	fix typo, use print_function	commit \| commitdiff \| tree
2015-10-20	Diane Trout	add knowledge about file links	commit \| commitdiff \| tree
2015-10-20	Diane Trout	updates to deal with encoded 33 path changes	commit \| commitdiff \| tree
2015-10-20	Diane Trout	Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2015-10-20	Diane Trout	move run_aws_cp command out of class to make it easier...	commit \| commitdiff \| tree
2015-09-24	Diane Trout	Return read_length for file properties	commit \| commitdiff \| tree
2015-09-23	Diane Trout	Use a re.split so we can accept both ', ' and ',' between...	commit \| commitdiff \| tree
2015-09-08	Diane Trout	indicate we want text not bytes	commit \| commitdiff \| tree
2015-09-08	Diane Trout	covert to using python3 config.get fallback=	commit \| commitdiff \| tree
2015-09-08	Diane Trout	convert from optparse to argparse	commit \| commitdiff \| tree
2015-09-08	Diane Trout	add some documentation -- shocking I know	commit \| commitdiff \| tree
2015-07-20	Diane Trout	python3 byte vs str compatibility for constructing...	commit \| commitdiff \| tree
2015-07-20	Diane Trout	script to help remigrate from old sqlite database to...	commit \| commitdiff \| tree
2015-07-20	Diane Trout	configuration file largely only useful for emacs elpy...	commit \| commitdiff \| tree
2015-07-20	Diane Trout	sort load_accession to make it easier to find things	commit \| commitdiff \| tree
2015-05-28	Diane Trout	remove unused imports	commit \| commitdiff \| tree
2015-05-26	Diane Trout	rename datarun to sequencing run, and propogate the...	commit \| commitdiff \| tree
2015-05-26	Diane Trout	set a created datetime in the factory, since I removed...	commit \| commitdiff \| tree
2015-05-21	Diane Trout	remove unused import	commit \| commitdiff \| tree
2015-05-21	Diane Trout	load in our encode3 accession numbers seperately from...	commit \| commitdiff \| tree
2015-05-21	Diane Trout	add a few common accession agencies to the standard...	commit \| commitdiff \| tree
2015-05-21	Diane Trout	Add AccessionAgency and LibraryAccession	commit \| commitdiff \| tree
2015-05-20	Diane Trout	localize all the RDF imports and use skipUnless to...	commit \| commitdiff \| tree
2015-05-20	Diane Trout	remove commented out code	commit \| commitdiff \| tree
2015-05-20	Diane Trout	import specific names instead of import factory	commit \| commitdiff \| tree
2015-05-20	Diane Trout	remove some unused imports	commit \| commitdiff \| tree
2015-05-20	Diane Trout	remove commented out code	commit \| commitdiff \| tree
2015-05-12	Diane Trout	remove unused imports	commit \| commitdiff \| tree
2015-05-12	Diane Trout	flake8 whitespace cleanup	commit \| commitdiff \| tree
2015-05-12	Diane Trout	remove unused imports	commit \| commitdiff \| tree
2015-05-12	Diane Trout	flake8 whitespace cleanup	commit \| commitdiff \| tree
2015-05-12	Diane Trout	flake8 whitespace cleanup	commit \| commitdiff \| tree
2015-05-12	Diane Trout	move comments out of experiments_flowcell flowcell...	commit \| commitdiff \| tree
2015-05-12	Diane Trout	remove unused import	commit \| commitdiff \| tree
2015-05-12	Diane Trout	flake8 whitespace cleanup	commit \| commitdiff \| tree
2015-05-12	Diane Trout	flake8 whitespace change	commit \| commitdiff \| tree
2015-05-12	Diane Trout	recreate samples initial migration as strings instead...	commit \| commitdiff \| tree
2015-05-12	Diane Trout	recreate initial migration as strings instead of bytestrings	commit \| commitdiff \| tree
2015-05-12	Diane Trout	move experiment templates into the experiments app	commit \| commitdiff \| tree
2015-05-05	Diane Trout	change the default for the DJANGO_SETTINGS_MODULE to...	commit \| commitdiff \| tree
2015-05-05	Diane Trout	simplify library report	commit \| commitdiff \| tree
2015-05-05	Diane Trout	update docstring	commit \| commitdiff \| tree
2015-05-05	Diane Trout	add in missing import	commit \| commitdiff \| tree
2015-05-05	Diane Trout	add in some missing imports	commit \| commitdiff \| tree
2015-05-05	Diane Trout	Remove unused imports	commit \| commitdiff \| tree
2015-05-05	Diane Trout	adjust whitespace	commit \| commitdiff \| tree
2015-05-05	Diane Trout	Add more tests for lanes_for	commit \| commitdiff \| tree
2015-05-05	Diane Trout	Move lanes_for from samples to experiments	commit \| commitdiff \| tree
2015-05-05	Diane Trout	Update dependency list	commit \| commitdiff \| tree
2015-05-05	Diane Trout	make version utf/python3 friendly	commit \| commitdiff \| tree
2015-05-05	Diane Trout	remove extra blank line	commit \| commitdiff \| tree
2015-04-06	Diane Trout	Oops I had a test function name collision. Rename one...	commit \| commitdiff \| tree
2015-04-06	Diane Trout	Drop support for simplejson	commit \| commitdiff \| tree
2015-04-06	Diane Trout	Remove suprious comma. Fixing a tuple <= int bug	commit \| commitdiff \| tree
2015-04-06	Diane Trout	Missed a couple of smart_text wrappings of django test...	commit \| commitdiff \| tree
2015-04-06	Diane Trout	Update test to be more robust to changing dictionary...	commit \| commitdiff \| tree
2015-04-06	Diane Trout	fix a white space issue	commit \| commitdiff \| tree
2015-04-06	Diane Trout	convert non-unit-tested module to use newer raise Exception...	commit \| commitdiff \| tree
2015-04-06	Diane Trout	convert several not covered by unit-test modules to...	commit \| commitdiff \| tree
2015-04-06	Diane Trout	Be more careful looking up keys when the fastqname...	commit \| commitdiff \| tree
2015-03-31	Diane Trout	add post_spreadsheet to create encoded objects from...	commit \| commitdiff \| tree
2015-03-31	Diane Trout	also validate documents before creating them	commit \| commitdiff \| tree
2015-03-31	Diane Trout	actually complain if we get the wrong type	commit \| commitdiff \| tree
2015-03-31	Diane Trout	add a docstring to validate	commit \| commitdiff \| tree
2015-03-31	Diane Trout	Add get_accession_name to use collection name to find...	commit \| commitdiff \| tree
2015-03-31	Diane Trout	support trying to figure out object type based on what...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Switch encode3 submitter to use aws.	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Import flowcell details into the triple store from...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	store flowcell name in the triple store if its known	commit \| commitdiff \| tree
2015-03-27	Diane Trout	record file size information for a file in the triple...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	Adjust logging overrides and move django.setup to after...	commit \| commitdiff \| tree
2015-03-27	Diane Trout	getitem should only return the key	commit \| commitdiff \| tree
2015-03-27	Diane Trout	clean up a bit of whitespace	commit \| commitdiff \| tree
2015-03-20	Diane Trout	configure using a local postgres install	commit \| commitdiff \| tree
2015-03-20	Diane Trout	Convert reads to an integer, if if it was a float in...	commit \| commitdiff \| tree
2015-03-20	Diane Trout	Actually comare an integer (length of list) to an integer 0.	commit \| commitdiff \| tree
2015-03-20	Diane Trout	The empty list is now not found	commit \| commitdiff \| tree
2015-03-20	Diane Trout	Drop library id encoding	commit \| commitdiff \| tree
2015-03-20	Diane Trout	Use regex to make sure scripts end with the right command	commit \| commitdiff \| tree
2015-03-20	Diane Trout	Use six.moves to find urlencode and urlopen	commit \| commitdiff \| tree
2015-03-20	Diane Trout	filter out None c.times in list of potential times	commit \| commitdiff \| tree
2015-03-20	Diane Trout	use relative import for submission_test_common	commit \| commitdiff \| tree
next

htsworkflow sequencing LIMS software

RSS Atom