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Allow arbitrarily long regexes in experiment.FileType table
2013-06-18
Diane Trout
Replace deprecated django.contrib adminmedia with staticfiles.
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2013-06-18
Diane Trout
Use proper User model import.
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2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
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2013-02-01
Diane Trout
Forgot to import an exception I used
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2013-02-01
Diane Trout
Make a sample key list to go along with our lane list
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2013-01-16
Diane Trout
Support scanning HiSeq runs with multiple analyses.
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2013-01-16
Diane Trout
Thrown an exception if we can't parse base calling...
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2013-01-15
Diane Trout
Start making documentation for htsworkflow.
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2013-01-09
Diane Trout
A better resolution to a possible circular dependency.
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2013-01-09
Diane Trout
Don't accidentally transform an object into a tuple.
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2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-01-08
Diane Trout
Try to make Aligned result directories optional in...
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2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
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2013-01-08
Diane Trout
Tweak timestamp format.
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2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
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2012-12-14
Diane Trout
Make my ChangeList sub-class compatibile with Django 1.3
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2012-12-13
Diane Trout
Make the inventory pages work with the new HTSChangeList.
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2012-12-13
Diane Trout
Django 1.4 requires the csrf token for posts.
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2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
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2012-12-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow...
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2012-12-12
Diane Trout
Simplify linking fastq files to their library id.
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2012-12-08
Diane Trout
Add a FastqName class to create and parse standardized...
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2012-11-30
Diane Trout
Change my copied version of admin.changelist to a subclass.
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2012-11-30
Diane Trout
The formatting for the model name changed.
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2012-11-29
Diane Trout
Add a few more records for django db initial_data.json.
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2012-11-29
Diane Trout
Use unittest2's module hooks for setting up the django...
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2012-11-29
Diane Trout
Change csrf imports and database settings for django 1.4
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2012-11-29
Diane Trout
Remove prints that were being called in test code.
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2012-11-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-11-28
Diane Trout
Changed name= to verbose_name= for LibraryType.
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2012-11-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-11-28
Diane Trout
Make extra sure Django's setup test environment is...
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2012-11-28
Diane Trout
Convert to unittest2
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2012-11-28
Diane Trout
Convert to unittest2
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2012-11-27
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-11-27
Diane Trout
Ignoring the missing type RDF error for the page under...
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2012-11-27
Diane Trout
Add dependencies to the setup.py
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2012-11-20
Diane Trout
Test presence of species & species name on library...
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2012-11-20
Diane Trout
Correctly implement merging Notification & Manager...
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2012-11-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-11-20
Diane Trout
Renamed various django tests.py to test_module.py
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2012-11-20
Diane Trout
Ignore .tox directory
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2012-11-20
Diane Trout
Fix RDF schema problems with lane_number and species.
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2012-11-20
Diane Trout
Run the library detail page through RDF validation.
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2012-11-20
Diane Trout
Change add_default_schema to use pkg_resources feature...
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2012-11-20
Diane Trout
Add dependency information to the setup.py script
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2012-11-20
Diane Trout
rdf:Resource can be either a resource or a blank node.
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2012-11-20
Diane Trout
Uniquely merge BCC and Manager lists for sending notificatio...
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2012-11-16
Diane Trout
Further attempts to validate RDF models.
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2012-11-14
Diane Trout
Add error message for typoing a result map filename.
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2012-11-14
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-10-11
Diane Trout
Catch another lookup error.
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2012-09-27
Diane Trout
older librdf wanted to include type information when...
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2012-09-27
Diane Trout
When collecting files for a geo submission, group on...
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2012-09-25
Diane Trout
This might actually generate soft file with raw & supplement...
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2012-09-24
Diane Trout
Merge changing lane_number to string and sequence finding...
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2012-09-24
Diane Trout
Add a log message to for debugging
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2012-09-24
Diane Trout
Define XHTML_RDF_DTD as None when we can't load the DTD
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2012-09-24
Diane Trout
Make the public html pages valid xhtml, and validate...
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2012-09-24
Diane Trout
remove some dead commented out code.
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2012-09-20
Diane Trout
Fix (some) missing closing tags.
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2012-09-20
Diane Trout
Make a validation error message between different ages...
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2012-09-20
Diane Trout
Also make the library index page conform to htsworkflow...
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2012-09-20
Diane Trout
Minor tweaks to deal with the older version of librdf...
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2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
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2012-09-19
Diane Trout
Refactor property type validator to support multiple...
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2012-09-19
Diane Trout
Add stub xhtml vocab ontology, to make model validation...
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2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htsworkflow
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2012-09-18
Diane Trout
email.bcc should be a list, not a nested list.
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2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-09-18
Diane Trout
Improvements to rdfinfer.
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2012-09-18
Diane Trout
Change rdfhelp.dump_model so you can specify a destination...
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2012-09-18
Diane Trout
Progress using rdf model to link fastqs with flowcell...
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2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-09-15
Diane Trout
Start implementing infering triples.
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2012-09-12
Diane Trout
Be more defensive if the database is missing some data...
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2012-09-12
Diane Trout
fix a wrong variable name
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2012-09-12
Diane Trout
Tweaks to make the sample gather query faster.
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2012-09-12
Diane Trout
Add a helpful error message when we need the submission...
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2012-09-12
Diane Trout
Another tweak to allow parser detection to work on...
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2012-09-11
Diane Trout
Better parser guessing when grabbing plain text from...
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2012-09-10
Diane Trout
Use the same model for building fastqs as for building...
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2012-09-10
Diane Trout
Allow retrying retrieving rdf from website a few times.
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2012-09-01
Diane Trout
Import flowcell information into our model this allows
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2012-09-01
Diane Trout
Have librdf open the urls in load_into_model instead...
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2012-09-01
Diane Trout
Automatically add the flowcell subdirectory to the...
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2012-08-31
Diane Trout
Older rdf library doesn't like unicode strings as nodes
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2012-08-31
Diane Trout
Fix matching scanned sequence files to library IDs...
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2012-08-31
Diane Trout
Inherit from MutableMapping for ResultMap.
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2012-08-31
Diane Trout
Allow option to save/restore a sequence class to a...
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2012-08-28
Diane Trout
Test RDFa encoded information for flowcell & libraries.
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2012-08-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-08-28
Diane Trout
sanitize_literal had trouble with empty strings.
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2012-08-28
Diane Trout
Attempt to come up with regexp to detect hiseq formatted...
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2012-08-09
Diane Trout
Fix some mismatches between variable names in python...
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2012-08-07
Diane Trout
Create a lane to file name turtle data file
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2012-08-07
Diane Trout
Simplify code to see if we already have a DataRun created.
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2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-08-06
Diane Trout
Don't link to lane for the raw result files section.
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2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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