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htsworkflow.git
2015-12-03
Diane Trout
report run_type
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2015-12-03
Diane Trout
report if a flowcell was single or paired ended as...
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2015-12-03
Diane Trout
remove unused imports and variables
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2015-11-30
Diane Trout
make a more informative log message
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2015-11-30
Diane Trout
Read the first sequence out of the fastq to find the...
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2015-11-30
Diane Trout
refactor encode3 spreadsheet based object creation...
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2015-11-30
Diane Trout
remove wsgiref requirement
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2015-11-11
Diane Trout
argparse is in versions of python we care about
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2015-10-27
Diane Trout
use decorator syntax for registering admin urls
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2015-10-27
Diane Trout
update dotted path for python3
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2015-10-27
Diane Trout
update url to new standard url
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2015-10-27
Diane Trout
Update schema tests for upstreams release 33
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2015-10-27
Diane Trout
make exception dotted name python3 compliant
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2015-10-20
Diane Trout
this works better with python 3...
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2015-10-20
Diane Trout
apparently json.dump can write to a stream
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2015-10-20
Diane Trout
Add mode to connect to the DCC and make sure the files...
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2015-10-20
Diane Trout
fix import path for HTTPError exception
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2015-10-20
Diane Trout
fix typo, use print_function
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2015-10-20
Diane Trout
add knowledge about file links
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2015-10-20
Diane Trout
updates to deal with encoded 33 path changes
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2015-10-20
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
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2015-10-20
Diane Trout
move run_aws_cp command out of class to make it easier...
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2015-09-24
Diane Trout
Return read_length for file properties
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2015-09-23
Diane Trout
Use a re.split so we can accept both ', ' and ',' betwe...
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2015-09-08
Diane Trout
indicate we want text not bytes
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2015-09-08
Diane Trout
covert to using python3 config.get fallback=
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2015-09-08
Diane Trout
convert from optparse to argparse
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2015-09-08
Diane Trout
add some documentation -- shocking I know
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2015-07-20
Diane Trout
python3 byte vs str compatibility for constructing...
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2015-07-20
Diane Trout
script to help remigrate from old sqlite database to...
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2015-07-20
Diane Trout
configuration file largely only useful for emacs elpy...
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2015-07-20
Diane Trout
sort load_accession to make it easier to find things
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2015-05-28
Diane Trout
remove unused imports
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2015-05-26
Diane Trout
rename datarun to sequencing run, and propogate the...
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2015-05-26
Diane Trout
set a created datetime in the factory, since I removed...
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2015-05-21
Diane Trout
remove unused import
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2015-05-21
Diane Trout
load in our encode3 accession numbers seperately from...
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2015-05-21
Diane Trout
add a few common accession agencies to the standard...
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2015-05-21
Diane Trout
Add AccessionAgency and LibraryAccession
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2015-05-20
Diane Trout
localize all the RDF imports and use skipUnless to...
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2015-05-20
Diane Trout
remove commented out code
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2015-05-20
Diane Trout
import specific names instead of import factory
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2015-05-20
Diane Trout
remove some unused imports
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2015-05-20
Diane Trout
remove commented out code
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2015-05-12
Diane Trout
remove unused imports
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2015-05-12
Diane Trout
flake8 whitespace cleanup
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2015-05-12
Diane Trout
remove unused imports
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2015-05-12
Diane Trout
flake8 whitespace cleanup
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2015-05-12
Diane Trout
flake8 whitespace cleanup
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2015-05-12
Diane Trout
move comments out of experiments_flowcell flowcell...
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2015-05-12
Diane Trout
remove unused import
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2015-05-12
Diane Trout
flake8 whitespace cleanup
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2015-05-12
Diane Trout
flake8 whitespace change
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2015-05-12
Diane Trout
recreate samples initial migration as strings instead...
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2015-05-12
Diane Trout
recreate initial migration as strings instead of bytest...
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2015-05-12
Diane Trout
move experiment templates into the experiments app
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2015-05-05
Diane Trout
change the default for the DJANGO_SETTINGS_MODULE to...
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2015-05-05
Diane Trout
simplify library report
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2015-05-05
Diane Trout
update docstring
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2015-05-05
Diane Trout
add in missing import
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2015-05-05
Diane Trout
add in some missing imports
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2015-05-05
Diane Trout
Remove unused imports
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2015-05-05
Diane Trout
adjust whitespace
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2015-05-05
Diane Trout
Add more tests for lanes_for
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2015-05-05
Diane Trout
Move lanes_for from samples to experiments
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2015-05-05
Diane Trout
Update dependency list
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2015-05-05
Diane Trout
make version utf/python3 friendly
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2015-05-05
Diane Trout
remove extra blank line
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2015-04-06
Diane Trout
Oops I had a test function name collision. Rename one...
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2015-04-06
Diane Trout
Drop support for simplejson
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2015-04-06
Diane Trout
Remove suprious comma. Fixing a tuple <= int bug
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2015-04-06
Diane Trout
Missed a couple of smart_text wrappings of django test...
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2015-04-06
Diane Trout
Update test to be more robust to changing dictionary...
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2015-04-06
Diane Trout
fix a white space issue
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2015-04-06
Diane Trout
convert non-unit-tested module to use newer raise Excep...
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2015-04-06
Diane Trout
convert several not covered by unit-test modules to...
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2015-04-06
Diane Trout
Be more careful looking up keys when the fastqname...
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2015-03-31
Diane Trout
add post_spreadsheet to create encoded objects from...
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2015-03-31
Diane Trout
also validate documents before creating them
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2015-03-31
Diane Trout
actually complain if we get the wrong type
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2015-03-31
Diane Trout
add a docstring to validate
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2015-03-31
Diane Trout
Add get_accession_name to use collection name to find...
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2015-03-31
Diane Trout
support trying to figure out object type based on what...
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2015-03-27
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
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2015-03-27
Diane Trout
Switch encode3 submitter to use aws.
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2015-03-27
Diane Trout
Import flowcell details into the triple store from...
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2015-03-27
Diane Trout
store flowcell name in the triple store if its known
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2015-03-27
Diane Trout
record file size information for a file in the triple...
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2015-03-27
Diane Trout
Adjust logging overrides and move django.setup to after...
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2015-03-27
Diane Trout
getitem should only return the key
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2015-03-27
Diane Trout
clean up a bit of whitespace
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2015-03-20
Diane Trout
configure using a local postgres install
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2015-03-20
Diane Trout
Convert reads to an integer, if if it was a float in...
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2015-03-20
Diane Trout
Actually comare an integer (length of list) to an integ...
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2015-03-20
Diane Trout
The empty list is now not found
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2015-03-20
Diane Trout
Drop library id encoding
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2015-03-20
Diane Trout
Use regex to make sure scripts end with the right command
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2015-03-20
Diane Trout
Use six.moves to find urlencode and urlopen
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2015-03-20
Diane Trout
filter out None c.times in list of potential times
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2015-03-20
Diane Trout
use relative import for submission_test_common
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