| 2008-05-15 |
Diane Trout | add rerun_eland.py which extracts sub-sequences from... |
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| 2008-05-14 |
Diane Trout | separate computing the sample/lane_id names from calcul... |
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| 2008-05-14 |
Brandon King | v0.2.0 progress |
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| 2008-05-13 |
Diane Trout | add additional debugging logging to retrieve_config... |
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| 2008-05-13 |
Diane Trout | logging.basicConfig should only be in top level scripts. |
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| 2008-05-10 |
Diane Trout | make it possible to include all alignments, not just... |
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| 2008-05-10 |
Diane Trout | makebed is a script too |
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| 2008-05-10 |
Diane Trout | Keep track of sample_name and lane_id computed from... |
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| 2008-05-09 |
Diane Trout | Make the runfolder splitting patch a bit more python... |
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| 2008-05-09 |
Diane Trout | update the setup.py file to the new name for the runfol... |
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| 2008-05-09 |
Diane Trout | Move runfolder analysis classes out of scripts/runfolde... |
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| 2008-04-24 |
Diane Trout | Add a script that takes a set of eland_result files... |
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| 2008-04-24 |
Diane Trout | Report cluster results with the rest of the lane summar... |
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| 2008-04-22 |
Diane Trout | also since nothing is currently using the pipelineFinis... |
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| 2008-04-22 |
Diane Trout | oops forgot to remove some debugging statements from... |
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| 2008-04-22 |
Diane Trout | Extend makebed to lookup metadata out of a copy of... |
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| 2008-04-21 |
Diane Trout | split the library script into a reusable database/repor... |
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| 2008-04-21 |
Diane Trout | Ignore binary files generated by python (*.py[co]) |
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| 2008-04-19 |
Lorian Schaeffer | Added the same changes I made to the 1.1 branch, all... |
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| 2008-04-09 |
Diane Trout | Add library.py, a script to extract a useful descriptio... |
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| 2008-04-01 |
Diane Trout | Don't die if Config/FlowcellId.xml is missing warn... |
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| 2008-04-01 |
Diane Trout | report statistics on the various eland_result sequence... |
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| 2008-03-28 |
Diane Trout | Don't die if Summary.htm isn't present |
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| 2008-03-28 |
Diane Trout | rename the summary report to summary_report to distingu... |
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| 2008-03-28 |
Diane Trout | make the mapped reads summary report more robust |
commit | commitdiff | tree | snapshot |
| 2008-03-27 |
Diane Trout | Add runfolder.py to the list of scripts |
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| 2008-03-26 |
Diane Trout | sort the sample mapped reads output |
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| 2008-03-25 |
Diane Trout | Add documentation about what runfolder.py does |
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| 2008-03-25 |
Lorian Schaeffer | Put ten_nM_dilution field back in library table, and... |
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| 2008-03-22 |
Diane Trout | Store the firecrest/bustard/gerald tuple in a new class... |
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| 2008-03-21 |
Diane Trout | Summarize information from the runfolder. |
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| 2008-03-21 |
Lorian Schaeffer | Hopefully undid accidental changes to views.py and... |
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| 2008-03-21 |
Lorian Schaeffer | Added a dropdown status field to flowcell table |
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| 2008-03-20 |
Lorian Schaeffer | Created table Person, with required fields "name" and... |
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| 2008-03-20 |
Lorian Schaeffer | Flowcell patch: |
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| 2008-03-20 |
Lorian Schaeffer | Removed fields kit_#_lot from library table (they were... |
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| 2008-03-19 |
Lorian Schaeffer | Library patch: |
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| 2008-03-06 |
Diane Trout | convert a single-match eland result file into a bed... |
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| 2008-03-06 |
Diane Trout | Add script to extract some subset of sequence from... |
commit | commitdiff | tree | snapshot |
| 2008-01-29 |
Diane Trout | DummyOptions didn't define a genome_dir member before... |
commit | commitdiff | tree | snapshot |
| 2008-01-23 |
Diane Trout | return most recent genome build for the pipeline config... |
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| 2008-01-23 |
Brandon King | Latest genome build, eland_config file temp. solution... |
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| 2008-01-17 |
Brandon King | Added a new get_cycles(recipe_xml_filepath) function in |
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| 2008-01-16 |
Brandon King | Spoolwatch function for getting cycle number from Recip... |
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| 2008-01-16 |
Brandon King | Attempt to support case insensitive config file names. |
commit | commitdiff | tree | snapshot |
| 2008-01-16 |
Brandon King | Fix for tickets #45 & #47 |
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| 2008-01-15 |
Diane Trout | Oops, forgot to provide a null body to my the stub... |
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| 2008-01-15 |
Diane Trout | pyinotify rm_watch takes a list, not a dictionary. |
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| 2008-01-15 |
Diane Trout | Update test_copier to reflect copiers move to gaworkflo... |
commit | commitdiff | tree | snapshot |
| 2008-01-15 |
Diane Trout | move the autotmation scripts into gaworkflow.automation |
commit | commitdiff | tree | snapshot |
| 2008-01-11 |
Diane Trout | Add the xmi file from umbrello documenting our basic... |
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| 2008-01-09 |
Diane Trout | always trigger a copy when we receive the sequencingFin... |
commit | commitdiff | tree | snapshot |
| 2008-01-08 |
Diane Trout | tell subversion to ignore *.py[co~] files |
commit | commitdiff | tree | snapshot |
| 2008-01-08 |
Diane Trout | make sequencingFinished return something instead of... |
commit | commitdiff | tree | snapshot |
| 2008-01-08 |
Diane Trout | Remove unnecessary code from the runner.py module |
commit | commitdiff | tree | snapshot |
| 2008-01-08 |
Diane Trout | Add script to make it easier to launch runner |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Diane Trout | use \w for alphanumeric flow cell IDs |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Runner now reports status when user sends status request! |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Runner now notifies users about success or failure... |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Runner seems to work with running the pipeline when... |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Work towards getting runner to work properly. |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Ok, one more option required. |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Forgot an option in the DummyOptions object. |
commit | commitdiff | tree | snapshot |
| 2008-01-03 |
Brandon King | Work towards disabling command-line parsing outside... |
commit | commitdiff | tree | snapshot |
| 2008-01-02 |
Brandon King | Updated regexs to support new and "improved" flow cell... |
commit | commitdiff | tree | snapshot |
| 2007-12-30 |
Diane Trout | direntry parser wasn't eating a trailing newline |
commit | commitdiff | tree | snapshot |
| 2007-12-30 |
Diane Trout | forgot to rename the caller and called when refactoring... |
commit | commitdiff | tree | snapshot |
| 2007-12-30 |
Diane Trout | split rsync directory listing correctly |
commit | commitdiff | tree | snapshot |
| 2007-12-22 |
Diane Trout | add a , to make customizing list of template dirs easier |
commit | commitdiff | tree | snapshot |
| 2007-12-21 |
Brandon King | Work towards a working runner bot... still needs a... |
commit | commitdiff | tree | snapshot |
| 2007-12-14 |
Brandon King | [project @ gaworkflow.runner progress] |
commit | commitdiff | tree | snapshot |
| 2007-12-11 |
Diane Trout | [project @ add skeleton for runner] |
commit | commitdiff | tree | snapshot |
| 2007-12-11 |
Diane Trout | [project @ send messages to notify_runner not self... |
commit | commitdiff | tree | snapshot |
| 2007-12-11 |
Brandon King | [project @ Bypass pipe lock mystery bug for configure... |
commit | commitdiff | tree | snapshot |
| 2007-12-11 |
Diane Trout | [project @ add a parser to spoolwatcher] |
commit | commitdiff | tree | snapshot |
| 2007-12-04 |
Brandon King | [project @ Config Step: Detect missing cycles patch] |
commit | commitdiff | tree | snapshot |
| 2007-12-10 |
Diane Trout | [project @ rename runFinished to sequencingFinished] |
commit | commitdiff | tree | snapshot |
| 2007-12-10 |
Diane Trout | [project @ make spoolwatcher a benderjab bot] |
commit | commitdiff | tree | snapshot |
| 2007-12-10 |
Diane Trout | [project @ use XmlRpcBot.rpc_send] |
commit | commitdiff | tree | snapshot |
| 2007-12-10 |
Diane Trout | [project @ Require a resource for JIDs that are used... |
commit | commitdiff | tree | snapshot |
| 2007-12-10 |
Diane Trout | [project @ moved check_option into benderjab] |
commit | commitdiff | tree | snapshot |
| 2007-12-08 |
Diane Trout | [project @ update CopierBot to new logging daemonizable... |
commit | commitdiff | tree | snapshot |
| 2007-11-30 |
Brandon King | [project @ Allow user to provide FC##### to download... |
commit | commitdiff | tree | snapshot |
| 2007-11-30 |
Brandon King | [project @ Small documentation fix for retrieve_config.] |
commit | commitdiff | tree | snapshot |
| 2007-11-30 |
Brandon King | [project @ Scientific name is no longer a unique field.] |
commit | commitdiff | tree | snapshot |
| 2007-11-27 |
Brandon King | [project @ Updating setup.py] |
commit | commitdiff | tree | snapshot |
| 2007-11-27 |
Brandon King | [project @ Missing __init__.py file in pipeline subpack... |
commit | commitdiff | tree | snapshot |
| 2007-11-26 |
Brandon King | [project @ run_status gerald correction (over estimated... |
commit | commitdiff | tree | snapshot |
| 2007-11-26 |
Brandon King | [project @ run_status correct firecrest expected file... |
commit | commitdiff | tree | snapshot |
| 2007-11-22 |
Brandon King | [project @ Run default changed to full run] |
commit | commitdiff | tree | snapshot |
| 2007-11-22 |
Brandon King | [project @ Shortend the s_generating regex; minor bug... |
commit | commitdiff | tree | snapshot |
| 2007-11-21 |
Brandon King | [project @ Monitor status implementation + config_pipel... |
commit | commitdiff | tree | snapshot |
| 2007-11-20 |
Brandon King | [project @ Added GARunStatus class for tracking percent... |
commit | commitdiff | tree | snapshot |
| 2007-11-20 |
Brandon King | [project @ Moved ga_frontend to gaworkflow.frontend... |
commit | commitdiff | tree | snapshot |
| 2007-11-20 |
Diane Trout | [project @ move brandon's pipeline handling code into... |
commit | commitdiff | tree | snapshot |
| 2007-11-20 |
Diane Trout | [project @ rename python module to gaworkflow from... |
commit | commitdiff | tree | snapshot |
| 2007-11-19 |
Brandon King | [project @ changed config file section from 'server_inf... |
commit | commitdiff | tree | snapshot |
| 2007-11-19 |
Brandon King | [project @ Removing bin/config_pipeline.py (use config_... |
commit | commitdiff | tree | snapshot |
| 2007-11-17 |
Brandon King | [project @ Download Cfg, Use genome mapper, configure... |
commit | commitdiff | tree | snapshot |
| 2007-11-17 |
Brandon King | [project @ retrieve_eland_config.py catches two new... |
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projects / htsworkflow.git / shortlog