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htsworkflow.git
2011-06-09 Diane TroutMove test srf files to testdata directory so I can... commit | commitdiff | tree | snapshot
2011-06-09 Diane TroutAdd a method to return the runfolder name. commit | commitdiff | tree | snapshot
2011-05-27 Diane TroutAdd in test code to verify RDF data being added to... commit | commitdiff | tree | snapshot
2011-05-27 Diane TroutTrivial change, add human to common name of "homo sapiens" commit | commitdiff | tree | snapshot
2011-05-26 Lorian SchaefferAdd feature to manage and print labels. commit | commitdiff | tree | snapshot
2011-05-26 Diane TroutMerge branch 'add-condition' commit | commitdiff | tree | snapshot
2011-05-25 Diane TroutMake antibody & condition visible. add-condition commit | commitdiff | tree | snapshot
2011-05-18 Diane TroutWrite the librdf model database somewhere other than... commit | commitdiff | tree | snapshot
2011-05-16 Diane TroutPretty print the json files to help debugging commit | commitdiff | tree | snapshot
2011-05-16 Diane TroutAllow configuring additional database settings so we... commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutAdd fake settings.py file point to the real htsworkflow... commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutMove default_pm setting to a little more predictable... commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutKeep moving settings around until I can find a place... commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutAdd utility program to help find what exists in georgi... commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutReport missing directory names to help diagnose sequenc... commit | commitdiff | tree | snapshot
2011-05-09 Diane TroutValidate fastq files in both phred33 & phred64 versions commit | commitdiff | tree | snapshot
2011-04-18 Diane TroutBe more flexible with fastq filenames. commit | commitdiff | tree | snapshot
2011-04-06 Diane Troutdjango-nose didn't work with django 1.1, so I went... commit | commitdiff | tree | snapshot
2011-04-05 Diane TroutAdjust django driver script to test the whole package. commit | commitdiff | tree | snapshot
2011-04-05 Diane TroutRevert a bad change. Apparently past me knew what I... commit | commitdiff | tree | snapshot
2011-04-05 Diane Troutremove spurious debugging print commit | commitdiff | tree | snapshot
2011-04-02 Diane TroutRemove spurious debug print statements commit | commitdiff | tree | snapshot
2011-04-02 Diane TroutFix a typo inserted into the template. commit | commitdiff | tree | snapshot
2011-04-02 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-04-02 Diane TroutAdd pages to show information about a particular flowcell. commit | commitdiff | tree | snapshot
2011-03-30 Diane TroutUpdate single vs paired guessing code commit | commitdiff | tree | snapshot
2011-03-09 Diane TroutUpdate spoolwatcher to 0.2 benderjab's logging api commit | commitdiff | tree | snapshot
2011-03-07 Diane TroutMove some common runfolder path management code into... commit | commitdiff | tree | snapshot
2011-03-07 Diane TroutAdd a place for "breadcrumbs" back into the base.html... commit | commitdiff | tree | snapshot
2011-02-26 Diane TroutIgnore emacs backup files for things other than python... commit | commitdiff | tree | snapshot
2011-02-26 Diane TroutSave the overrides to the RDF model. commit | commitdiff | tree | snapshot
2011-02-26 Diane TroutOnly pull web data when its missing from the rdf model. commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutMajor updateds to encode_find for extracting encode... commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutOnly use one name for dates on the page. commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutMinor RDFa cleanups commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutChange default font size to 14pt commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutAdd RDFa data to our library pages. commit | commitdiff | tree | snapshot
2011-02-17 Diane TroutAdd a small comment defining "results_dir" commit | commitdiff | tree | snapshot
2011-02-16 Diane TroutAdd in patterns for Encode Elements submission commit | commitdiff | tree | snapshot
2011-02-15 Diane TroutStarting component to try and figure out what we've... commit | commitdiff | tree | snapshot
2011-02-15 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-02-15 Diane TroutMake plus/minus bigwig filename extension a bit more... commit | commitdiff | tree | snapshot
2011-02-14 Diane TroutAdd in support for generating md5sums for files commit | commitdiff | tree | snapshot
2011-02-07 Diane TroutAdd in a little bit of qseq2fastq testing code. More... commit | commitdiff | tree | snapshot
2011-02-07 Diane TroutAdd documentation about which Phred format we're generating commit | commitdiff | tree | snapshot
2011-02-03 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-02-03 Diane TroutFirst cycle can be 2 digit. commit | commitdiff | tree | snapshot
2011-01-25 Diane TroutFix typo in a function name. commit | commitdiff | tree | snapshot
2011-01-25 Diane TroutAdd in 12x / 18x PCR protocol end points from Lorian commit | commitdiff | tree | snapshot
2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-01-25 rootMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-01-25 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2011-01-21 Diane TroutUpdate view names as per Cricket for the Jan 21st encod... commit | commitdiff | tree | snapshot
2011-01-21 Diane TroutMerge branch 'master' of gitosis@mus.cacr.caltech.edu... commit | commitdiff | tree | snapshot
2011-01-21 Diane TroutAdd function to ucsc submission tool to make symlink... commit | commitdiff | tree | snapshot
2011-01-14 rootMake replicate field visable on the public page. commit | commitdiff | tree | snapshot
2011-01-12 Diane TroutInclude version.py in source distribution for setup.py commit | commitdiff | tree | snapshot
2011-01-08 Diane TroutAdd validation script 0.5.0 commit | commitdiff | tree | snapshot
2011-01-04 Diane TroutRename all the scripts to start with htsw- commit | commitdiff | tree | snapshot
2010-12-21 Diane TroutAdd utility to fix the off-by-3 error in the amplified... commit | commitdiff | tree | snapshot
2010-12-02 Diane TroutMake the inventory login page look a bit nicer. commit | commitdiff | tree | snapshot
2010-12-02 Diane TroutAdjust some whitespace commit | commitdiff | tree | snapshot
2010-12-01 Diane TroutThis mildly adjusts the css to be a bit prettier commit | commitdiff | tree | snapshot
2010-12-01 Diane TroutAdd a new ini-file option to point to the flowcell... commit | commitdiff | tree | snapshot
2010-11-30 Diane TroutAdd config option notification_bcc for always attaching... commit | commitdiff | tree | snapshot
2010-11-17 Diane TroutCache the attributes for each type of fastq file. commit | commitdiff | tree | snapshot
2010-11-16 Diane TroutMap junctions.bed to the Junctions view. commit | commitdiff | tree | snapshot
2010-11-16 Diane TroutAutodetect location of *2fastq scripts commit | commitdiff | tree | snapshot
2010-11-15 Diane TroutDon't count failed flowcells when guessing if a library... commit | commitdiff | tree | snapshot
2010-11-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2010-11-07 Diane TroutVery basic non-ExtJS version of the inventory page commit | commitdiff | tree | snapshot
2010-11-07 Diane TroutRemove another ExtJS panel reference. commit | commitdiff | tree | snapshot
2010-11-05 Diane TroutUpdate to the new UCSC DAF file. commit | commitdiff | tree | snapshot
2010-11-03 Diane TroutCreate a class to handle mapping extension to ucsc... commit | commitdiff | tree | snapshot
2010-11-02 Diane TroutTwo lines between functions (trivial change) commit | commitdiff | tree | snapshot
2010-11-01 Diane TroutOnly complane about missing genomes if we _wanted_... commit | commitdiff | tree | snapshot
2010-11-01 Diane TroutCheck for s_${lane}_02_matrix.txt as well as s_${lane... commit | commitdiff | tree | snapshot
2010-10-28 Diane TroutRemove dependency on ExtJS for library & lanes_for... commit | commitdiff | tree | snapshot
2010-10-27 Diane TroutThe WITH_SEQUENCE flag needs to be lower-case "true". commit | commitdiff | tree | snapshot
2010-10-22 Diane TroutReport version number derived from git tag. commit | commitdiff | tree | snapshot
2010-10-19 Diane TroutSet WITH_SEQUENCE as both a per-lane AND global parameter 0.4.5 commit | commitdiff | tree | snapshot
2010-10-08 Diane TroutWITH_SEQUENCE is actually a global GERALD option, remov... commit | commitdiff | tree | snapshot
2010-10-07 Diane TroutUpdate gerald config file generation. commit | commitdiff | tree | snapshot
2010-10-05 Lorian SchaefferMinor changes to display commit | commitdiff | tree | snapshot
2010-10-01 Lorian SchaefferRemoved some models from the admin index view commit | commitdiff | tree | snapshot
2010-10-01 Lorian SchaefferChanged Frequently Used links to be properly relative commit | commitdiff | tree | snapshot
2010-10-01 Lorian SchaefferRemoved from admin index page commit | commitdiff | tree | snapshot
2010-10-01 Lorian SchaefferRemoved unused DataRun model from admin index page commit | commitdiff | tree | snapshot
2010-10-01 Lorian SchaefferRemoved all analysis models from main admin index commit | commitdiff | tree | snapshot
2010-10-01 Lorian SchaefferLimited which models show up on admin index page commit | commitdiff | tree | snapshot
2010-09-30 Diane TroutIgnore some files generated by python commit | commitdiff | tree | snapshot
2010-09-24 Diane TroutAdjust spoolwatchers use of inotify to correspond to... commit | commitdiff | tree | snapshot
2010-09-24 Diane TroutHandle the case when a sequencing lane lacks any yield... commit | commitdiff | tree | snapshot
2010-09-24 Diane TroutRemind myself that dry-run doesn't work with the extrac... commit | commitdiff | tree | snapshot
2010-09-10 Diane TroutAdd support for CASAVA 1.7 commit | commitdiff | tree | snapshot
2010-08-24 Diane TroutBetter detect which program ids generated CNF4 srf... commit | commitdiff | tree | snapshot
2010-08-24 Diane TroutSplit parts of build_fastqs into a seperate function. commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software