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htsworkflow.git
2015-09-23 Diane TroutUse a re.split so we can accept both ', ' and ',' betwe... commit | commitdiff | tree | snapshot
2015-09-08 Diane Troutindicate we want text not bytes commit | commitdiff | tree | snapshot
2015-09-08 Diane Troutcovert to using python3 config.get fallback= commit | commitdiff | tree | snapshot
2015-09-08 Diane Troutconvert from optparse to argparse commit | commitdiff | tree | snapshot
2015-09-08 Diane Troutadd some documentation -- shocking I know commit | commitdiff | tree | snapshot
2015-07-20 Diane Troutpython3 byte vs str compatibility for constructing... commit | commitdiff | tree | snapshot
2015-07-20 Diane Troutscript to help remigrate from old sqlite database to... commit | commitdiff | tree | snapshot
2015-07-20 Diane Troutconfiguration file largely only useful for emacs elpy... commit | commitdiff | tree | snapshot
2015-07-20 Diane Troutsort load_accession to make it easier to find things commit | commitdiff | tree | snapshot
2015-05-28 Diane Troutremove unused imports commit | commitdiff | tree | snapshot
2015-05-26 Diane Troutrename datarun to sequencing run, and propogate the... commit | commitdiff | tree | snapshot
2015-05-26 Diane Troutset a created datetime in the factory, since I removed... commit | commitdiff | tree | snapshot
2015-05-21 Diane Troutremove unused import commit | commitdiff | tree | snapshot
2015-05-21 Diane Troutload in our encode3 accession numbers seperately from... commit | commitdiff | tree | snapshot
2015-05-21 Diane Troutadd a few common accession agencies to the standard... commit | commitdiff | tree | snapshot
2015-05-21 Diane TroutAdd AccessionAgency and LibraryAccession commit | commitdiff | tree | snapshot
2015-05-20 Diane Troutlocalize all the RDF imports and use skipUnless to... commit | commitdiff | tree | snapshot
2015-05-20 Diane Troutremove commented out code commit | commitdiff | tree | snapshot
2015-05-20 Diane Troutimport specific names instead of import factory commit | commitdiff | tree | snapshot
2015-05-20 Diane Troutremove some unused imports commit | commitdiff | tree | snapshot
2015-05-20 Diane Troutremove commented out code commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutremove unused imports commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutflake8 whitespace cleanup commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutremove unused imports commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutflake8 whitespace cleanup commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutflake8 whitespace cleanup commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutmove comments out of experiments_flowcell flowcell... commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutremove unused import commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutflake8 whitespace cleanup commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutflake8 whitespace change commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutrecreate samples initial migration as strings instead... commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutrecreate initial migration as strings instead of bytest... commit | commitdiff | tree | snapshot
2015-05-12 Diane Troutmove experiment templates into the experiments app commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutchange the default for the DJANGO_SETTINGS_MODULE to... commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutsimplify library report commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutupdate docstring commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutadd in missing import commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutadd in some missing imports commit | commitdiff | tree | snapshot
2015-05-05 Diane TroutRemove unused imports commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutadjust whitespace commit | commitdiff | tree | snapshot
2015-05-05 Diane TroutAdd more tests for lanes_for commit | commitdiff | tree | snapshot
2015-05-05 Diane TroutMove lanes_for from samples to experiments commit | commitdiff | tree | snapshot
2015-05-05 Diane TroutUpdate dependency list commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutmake version utf/python3 friendly commit | commitdiff | tree | snapshot
2015-05-05 Diane Troutremove extra blank line commit | commitdiff | tree | snapshot
2015-04-06 Diane TroutOops I had a test function name collision. Rename one... commit | commitdiff | tree | snapshot
2015-04-06 Diane TroutDrop support for simplejson commit | commitdiff | tree | snapshot
2015-04-06 Diane TroutRemove suprious comma. Fixing a tuple <= int bug commit | commitdiff | tree | snapshot
2015-04-06 Diane TroutMissed a couple of smart_text wrappings of django test... commit | commitdiff | tree | snapshot
2015-04-06 Diane TroutUpdate test to be more robust to changing dictionary... commit | commitdiff | tree | snapshot
2015-04-06 Diane Troutfix a white space issue commit | commitdiff | tree | snapshot
2015-04-06 Diane Troutconvert non-unit-tested module to use newer raise Excep... commit | commitdiff | tree | snapshot
2015-04-06 Diane Troutconvert several not covered by unit-test modules to... commit | commitdiff | tree | snapshot
2015-04-06 Diane TroutBe more careful looking up keys when the fastqname... commit | commitdiff | tree | snapshot
2015-03-31 Diane Troutadd post_spreadsheet to create encoded objects from... commit | commitdiff | tree | snapshot
2015-03-31 Diane Troutalso validate documents before creating them commit | commitdiff | tree | snapshot
2015-03-31 Diane Troutactually complain if we get the wrong type commit | commitdiff | tree | snapshot
2015-03-31 Diane Troutadd a docstring to validate commit | commitdiff | tree | snapshot
2015-03-31 Diane TroutAdd get_accession_name to use collection name to find... commit | commitdiff | tree | snapshot
2015-03-31 Diane Troutsupport trying to figure out object type based on what... commit | commitdiff | tree | snapshot
2015-03-27 Diane TroutMerge branch 'django1.7' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2015-03-27 Diane TroutSwitch encode3 submitter to use aws. commit | commitdiff | tree | snapshot
2015-03-27 Diane TroutImport flowcell details into the triple store from... commit | commitdiff | tree | snapshot
2015-03-27 Diane Troutstore flowcell name in the triple store if its known commit | commitdiff | tree | snapshot
2015-03-27 Diane Troutrecord file size information for a file in the triple... commit | commitdiff | tree | snapshot
2015-03-27 Diane TroutAdjust logging overrides and move django.setup to after... commit | commitdiff | tree | snapshot
2015-03-27 Diane Troutgetitem should only return the key commit | commitdiff | tree | snapshot
2015-03-27 Diane Troutclean up a bit of whitespace commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutconfigure using a local postgres install commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutConvert reads to an integer, if if it was a float in... commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutActually comare an integer (length of list) to an integ... commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutThe empty list is now not found commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutDrop library id encoding commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutUse regex to make sure scripts end with the right command commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutUse six.moves to find urlencode and urlopen commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutfilter out None c.times in list of potential times commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutuse relative import for submission_test_common commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutTry to detect if an object is a file type on python... commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutreplace xrange with enumerate commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutUse ''.splitlines() instead of split('\n') commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutadapt to python2 returning lists and python3 iterators commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutuse sorted on the iterator instead of an in-place sort commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutUse max on the iterator to find the last key commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutadd more from __future__ import print_function, unicode... commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutCall print(msg) instead of print msg commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutspecial case unicode handling that differs between... commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutReplace some unicode() with str() commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutUse isinstance(object, (types)) pattern instead of... commit | commitdiff | tree | snapshot
2015-03-20 Diane TroutSpecify text vs binary mode for opening files. commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutprefer native string types. commit | commitdiff | tree | snapshot
2015-03-20 Diane Troutupdate more raise exceptions to Exception(message)... commit | commitdiff | tree | snapshot
2015-03-19 Diane TroutUse django.utils.encode smart_text or smart_str for... commit | commitdiff | tree | snapshot
2015-03-18 Diane Troutimport urljoin from six.moves.urllib.parse commit | commitdiff | tree | snapshot
2015-03-18 Diane Troutuse JsonResponse instead of making a json response... commit | commitdiff | tree | snapshot
2015-03-18 Diane Troutdrop support for simplejson. were only caring about... commit | commitdiff | tree | snapshot
2015-03-18 Diane Troutimport ConfigParser classes from six.moves.configparser commit | commitdiff | tree | snapshot
2015-03-18 Diane Troutuse absolute_import commit | commitdiff | tree | snapshot
2015-02-03 Diane Troutnew json code returns [] when there are no lanes commit | commitdiff | tree | snapshot
2015-02-03 Diane Troutconvert to unicode_literals commit | commitdiff | tree | snapshot
2015-02-02 Diane Trouttake advantage of absolute_import to simplify import... commit | commitdiff | tree | snapshot
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htsworkflow sequencing LIMS software