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htsworkflow.git
2010-01-21
Diane Trout
Update test code to deal with the switch to storing...
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2010-01-21
Diane Trout
Don't throw an error if library.cell_line is None.
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2010-01-13
Diane Trout
Modify qseq2fastq to also read from compressed tar...
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2010-01-07
Diane Trout
Update the usage string for qseq2fastq
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2009-12-15
Diane Trout
Add flowcell/lane information for a library to the...
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2009-12-15
Diane Trout
Define the unicode() function for HTSUser to also repor...
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2009-12-15
Diane Trout
Include information about the flowcell run date on...
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2009-12-15
Diane Trout
Make the basic library page show up when javascript...
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2009-12-15
Diane Trout
Tell people to use the https address so it'll work...
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2009-12-11
Diane Trout
Modify the srf utility to tar.bz2 the qseq files instea...
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2009-12-01
Diane Trout
Replace '.' with 'N' in the sequence from qseq files.
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2009-12-01
Diane Trout
Fix typo in srf command
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2009-12-01
Diane Trout
Also include the read ID in the fastq header
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2009-12-01
Diane Trout
Add a simple utility to convert qseq to fastq files.
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2009-11-25
Diane Trout
Watch for a list of files to indicate that the flowcell...
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2009-11-13
Diane Trout
Override extjs's rather harsh stylesheet so the library...
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2009-11-10
Diane Trout
Don't add the post_run_command unless the option and...
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2009-11-10
Diane Trout
Remport that the pipeline will be done in X to Y days...
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2009-10-27
Diane Trout
update inventory status template to use new field name...
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2009-10-27
Diane Trout
Allow specifying which database to convert
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2009-10-27
Diane Trout
Turn the library_id back into the primary key for sampl...
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2009-10-17
Diane Trout
Figure out the absolute path to the runfolder for passi...
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2009-10-08
Diane Trout
Also use the javascript dual panel choice box for tags.
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2009-10-08
Diane Trout
In some cases test_retrive_config will attempt to norma...
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2009-10-08
Diane Trout
Use raw_id_fields for the library ID in the Flowcell...
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2009-10-08
Diane Trout
Add the ability not to build srf files.
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2009-10-06
Diane Trout
Add an account number field to a library. (Note SCHEMA...
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2009-10-06
Diane Trout
Add a bread crumb to the send started email page.
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2009-10-06
Diane Trout
Remove spurious print
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2009-10-06
Diane Trout
Test that the email notification actually generates...
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2009-10-06
Diane Trout
Use eland_extended or eland_pair instead of eland for...
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2009-10-06
Diane Trout
Default to sequencing if we don't have a genome for...
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2009-10-02
Diane Trout
Test the updated version of extract results that builds...
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2009-09-30
Diane Trout
Add building srf files to runfolder as part of --extrac...
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2009-09-28
Diane Trout
Modify hdquery to not die when being imported on non...
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2009-09-26
Diane Trout
The config file should also set the SEQUENCE_FORMAT
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2009-09-26
Diane Trout
HttpRequest.getcode doesn't exist in python 2.4, use...
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2009-09-26
Diane Trout
Implement a client side config file generator.
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2009-09-26
Diane Trout
Print library.library_id instead of the flowcell.librar...
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2009-09-23
Diane Trout
Return species information as part of the flowcell...
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2009-09-19
Diane Trout
Put a stub species_json in, as I'd listed it in the...
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2009-09-19
Diane Trout
Allow grabbing library information via json.
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2009-09-19
Diane Trout
Add a /config/<fcid>/json url that returns information...
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2009-09-19
Diane Trout
Django really wanted a 404 template.
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2009-09-16
Diane Trout
Force addition of HTSUser object if someone is creating...
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2009-09-16
Diane Trout
Replace some prints with logging.info messages and
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2009-09-14
Diane Trout
Fix ticket:145 this patch includes the tar.bz2 extensio...
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2009-09-11
Diane Trout
Apparently I should've rendered the emails in plain...
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2009-09-11
Diane Trout
None is better than a baddly munged string for when...
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2009-09-10
Diane Trout
Don't crash if there are no lane result summary entries...
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2009-09-10
Diane Trout
Report if the Summary.htm file is missing the Lane...
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2009-09-10
Diane Trout
Remove spurious pring debugging statements as they...
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2009-09-03
Brandon King
wsgi print error fixed.
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2009-09-02
Diane Trout
remove spurious debug print statement
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2009-09-01
Diane Trout
Report who the site managers are for the BCC
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2009-08-25
Brandon King
Added control_lane column to Flowcell.
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2009-08-22
Brandon King
No printing allowed; fixed.
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2009-08-22
Diane Trout
Now adding a user adds the key linking the htsuser...
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2009-08-22
Brandon King
Implemented custom templates by inventory type using...
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2009-08-20
Diane Trout
Implement a send started email feature.
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2009-08-20
Diane Trout
Reorder imports in model to make me happy.
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2009-08-20
Brandon King
Update user db when doing update.
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2009-08-19
Diane Trout
Use hasattr instead of checking for django version...
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2009-08-19
Brandon King
Finished removing bcprinter module by moving what littl...
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2009-08-19
Brandon King
Moved bcprinter.util to bcmagic.util.
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2009-08-19
Brandon King
Moved bcprinter/util.py to bcmagic/util.py
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2009-08-19
Brandon King
Hard Drive Shell label made by Lorian; templatized...
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2009-08-19
Brandon King
Admin compatibility for changes in Django >= 1.1.
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2009-08-19
Diane Trout
Forgot to update one request to request.REQUEST variabl...
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2009-08-19
Diane Trout
Convert stanford/hudson alpha's updStatus to work with...
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2009-08-18
Diane Trout
Update hudson alpha's eland config file generator to...
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2009-08-18
Diane Trout
Update eland_config generator to work with the new...
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2009-08-18
Diane Trout
Update Rami's flowcell report to work with our new...
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2009-08-18
Diane Trout
Add a custom (inherited) user object named HTSUser...
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2009-08-18
Diane Trout
Fix code where the python str() function had been overr...
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2009-08-14
Brandon King
Lorian's request for a thin comment field implemented.
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2009-08-14
Brandon King
Lorian's requested filter by status; requires at least...
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2009-08-13
Brandon King
New way of accessing pM for a lane in _summary_stats
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2009-08-13
Brandon King
Lane number fix for _summary_stats function and library...
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2009-08-13
Brandon King
New lane model patch for library_to_flowcells view.
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2009-08-12
Diane Trout
Converted Brandon's scripts into a single python script...
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2009-08-12
Diane Trout
Move Brandon's upgrade script in with all the other...
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2009-08-11
Brandon King
Making it more clear what the script does.
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2009-08-11
Brandon King
Script for conversion of db; start of fixes brought...
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2009-08-10
Brandon King
print killing wsgi; minor fix.
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2009-08-07
Brandon King
New Lane Table migration progress.
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2009-08-06
Brandon King
Barcode Magic Initial Data
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2009-08-04
Brandon King
Minor update.
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2009-07-24
Brandon King
Lorian supplied quick fix for 32 char UUIDs.
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2009-07-23
Brandon King
Lorian requested item search box
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2009-07-23
Diane Trout
ReadPreps can also use the netcopy complete flags which...
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2009-07-21
Brandon King
Moved from ext-3.0-rc2 to ext-3.0.0.
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2009-07-21
Diane Trout
Allow specifying the we're finished sequencing file...
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2009-07-20
Brandon King
Lorian requested save_as feature in admin interface.
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2009-07-13
Brandon King
Prototype of bcmagic search plugin.
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2009-07-11
Brandon King
Adding ReagentLibrary & ReagentFlowcell tables in Inven...
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2009-07-07
Brandon King
Attempted linking to archived hard drive.
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2009-07-07
Brandon King
Attempted linking to archived hard drive.
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2009-07-06
Brandon King
Update to item summary now displays Long Term Storage...
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2009-07-06
Brandon King
Updated inventory to support display of inventory items...
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