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2007-03-27	Diane Trout	Handle subseq when the parent is on the minus strand	commit \| commitdiff \| tree
2007-03-24	Diane Trout	move strand into seqspan	commit \| commitdiff \| tree
2007-03-21	Diane Trout	Missed part of "Store Sequence sequence location in...	commit \| commitdiff \| tree
2007-03-21	Diane Trout	Move alphabet type into SeqString	commit \| commitdiff \| tree
2007-03-20	Diane Trout	Store Sequence sequence location in a shared_ptr class	commit \| commitdiff \| tree
2007-03-08	Diane Trout	make sure paths continue to start with a /	commit \| commitdiff \| tree
2007-03-08	Diane Trout	add a useful comment	commit \| commitdiff \| tree
2007-02-26	Diane Trout	mupa for test case	commit \| commitdiff \| tree
2007-02-23	Diane Trout	cmake was trying to link -loptimized	commit \| commitdiff \| tree
2007-02-21	Diane Trout	keep motifs after closing window	commit \| commitdiff \| tree
2007-02-20	Diane Trout	more error messages for loading an annotation.	commit \| commitdiff \| tree
2007-02-15	Diane Trout	ignore paircomp	commit \| commitdiff \| tree
2007-02-13	Diane Trout	IsFileValidator doesn't use signal/slots	commit \| commitdiff \| tree
2007-02-03	Diane Trout	detect 64bit processors and add -fPIC	commit \| commitdiff \| tree
2007-01-05	Diane Trout	add some newlines at the end of some of our files	commit \| commitdiff \| tree
2007-01-04	Diane Trout	conditionally build the paircomp tests	commit \| commitdiff \| tree
2007-01-04	Diane Trout	paircomp used the string find_first_not_of	commit \| commitdiff \| tree
2007-01-04	Diane Trout	split unittests into seperate executables	commit \| commitdiff \| tree
2006-12-21	Diane Trout	build paircomp if available	commit \| commitdiff \| tree
2006-12-14	Diane Trout	len(mussa.paths()) should equal the number of found...	commit \| commitdiff \| tree
2006-12-13	Diane Trout	be resistent to not creating the browser	commit \| commitdiff \| tree
2006-12-13	Diane Trout	make mussawindow initialize icons	commit \| commitdiff \| tree
2006-12-13	Diane Trout	try to reduce number of moveToThread warnings	commit \| commitdiff \| tree
2006-12-12	Diane Trout	fix infinite loop for absolute pathnames	commit \| commitdiff \| tree
2006-12-07	Diane Trout	provide get_py and get_py_ptr	commit \| commitdiff \| tree
2006-12-07	Diane Trout	cut down on unnecessary linking to the python library	commit \| commitdiff \| tree
2006-12-07	Diane Trout	Allocating objects in the constructor causes problems	commit \| commitdiff \| tree
2006-12-05	Diane Trout	make compiled in python extension initialization more...	commit \| commitdiff \| tree
2006-12-05	Diane Trout	directly build the python extension modules	commit \| commitdiff \| tree
2006-12-05	Diane Trout	provide python interpreter for mussa qui via a seperate...	commit \| commitdiff \| tree
2006-11-30	Diane Trout	allow adding and viewing sequences to an analysis from...	commit \| commitdiff \| tree
2006-11-29	Diane Trout	add python interface to seqcomp	commit \| commitdiff \| tree
2006-11-22	Diane Trout	Finish off setting sequence offset user interface	commit \| commitdiff \| tree
2006-11-21	Diane Trout	quick option to show sequence properties window	commit \| commitdiff \| tree
2006-11-21	Diane Trout	rename ok/cancel to okButton/cancelButton	commit \| commitdiff \| tree
2006-11-21	Diane Trout	fix bad #ifdef names	commit \| commitdiff \| tree
2006-11-17	Diane Trout	more fs::native for user supplied paths	commit \| commitdiff \| tree
2006-11-02	Diane Trout	include sequence property editor source files	commit \| commitdiff \| tree
2006-11-01	Diane Trout	allow copying files into a dmg	commit \| commitdiff \| tree
2006-10-31	Diane Trout	update CMakeLists.txt to build new SequencePropertiesWindow	commit \| commitdiff \| tree
2006-10-31	Diane Trout	update osxdist for qt4.2.1	commit \| commitdiff \| tree
2006-10-30	Diane Trout	move SubanalysisWindow code to a subdirectory	commit \| commitdiff \| tree
2006-10-30	Diane Trout	include filename in unparsable annotation error message	commit \| commitdiff \| tree
2006-10-30	Diane Trout	report filename for invalid fasta files	commit \| commitdiff \| tree
2006-10-28	Diane Trout	don't use staticly allocated widgets	commit \| commitdiff \| tree
2006-10-28	Diane Trout	add include QCloseEvent to MussaWindow.hpp	commit \| commitdiff \| tree
2006-10-28	Diane Trout	allow verticle scrollbar for sequence browser widget	commit \| commitdiff \| tree
2006-10-28	Diane Trout	compute the correct starting window size	commit \| commitdiff \| tree
2006-10-27	Diane Trout	use pointers for zoom spinbox in ZoomWidget	commit \| commitdiff \| tree
2006-10-27	Diane Trout	Use Qt4.2 openUrl to show manual	commit \| commitdiff \| tree
2006-10-27	Diane Trout	implement set window state	commit \| commitdiff \| tree
2006-10-26	Diane Trout	include icon extension for os x bundle information	commit \| commitdiff \| tree
2006-10-26	Diane Trout	add copy sequence as string option	commit \| commitdiff \| tree
2006-10-26	Diane Trout	display number of basepairs copied	commit \| commitdiff \| tree
2006-10-24	Diane Trout	tagged release_1.0_rc3	commit \| commitdiff \| tree
2006-10-24	Diane Trout	call set_soft_threshold after subanalysis	commit \| commitdiff \| tree
2006-10-23	Diane Trout	Enable Qt4 tests	commit \| commitdiff \| tree
2006-10-20	Diane Trout	add nl to end of 3 files	commit \| commitdiff \| tree
2006-10-20	Diane Trout	avoid multiple calls to setSoftThreshold	commit \| commitdiff \| tree
2006-10-20	Diane Trout	copy motifs to a new subanalysis	commit \| commitdiff \| tree
2006-10-19	Diane Trout	fix motif loader under release build	commit \| commitdiff \| tree
2006-10-19	Diane Trout	Sequence::rev_comp works on subsequences	commit \| commitdiff \| tree
2006-10-18	Diane Trout	add to_upper_case to some sequence unittests	commit \| commitdiff \| tree
2006-10-17	Diane Trout	be more forging of user provided file names	commit \| commitdiff \| tree
2006-10-17	Diane Trout	remove old code	commit \| commitdiff \| tree
2006-10-17	Diane Trout	ignore eclipse settings	commit \| commitdiff \| tree
2006-10-17	Diane Trout	add a manually updated version number.	commit \| commitdiff \| tree
2006-10-17	Diane Trout	test_mussa_python also had an unecesary QtOpenGL library...	commit \| commitdiff \| tree
2006-10-17	Diane Trout	attempt to make buildnum.py generate a useful header	commit \| commitdiff \| tree
2006-10-17	Diane Trout	motif save should have a default extension.	commit \| commitdiff \| tree
2006-10-17	Diane Trout	don't like QTOPENGL to python module	commit \| commitdiff \| tree
2006-10-17	Diane Trout	changing motifs should make the analysis dirty	commit \| commitdiff \| tree
2006-10-17	Diane Trout	always add a blank motif	commit \| commitdiff \| tree
2006-10-17	Diane Trout	more python interface to Sequence	commit \| commitdiff \| tree
2006-10-17	Diane Trout	force loaded sequence to uppercase	commit \| commitdiff \| tree
2006-10-17	Diane Trout	validate app bundle before shipping	commit \| commitdiff \| tree
2006-10-17	Diane Trout	don't link against X11 on OS X	commit \| commitdiff \| tree
2006-10-14	Diane Trout	don't seqcomp sequences that are too small	commit \| commitdiff \| tree
2006-10-14	Diane Trout	add operator< to ConservedPath	commit \| commitdiff \| tree
2006-10-13	Diane Trout	save motifs with the analysis	commit \| commitdiff \| tree
2006-10-13	Diane Trout	pass default_dir around	commit \| commitdiff \| tree
2006-10-13	Diane Trout	change default_dir to a QDir	commit \| commitdiff \| tree
2006-10-12	Diane Trout	cleanup image save dialog aesthetics	commit \| commitdiff \| tree
2006-10-12	Diane Trout	tabs are of the devil	commit \| commitdiff \| tree
2006-10-12	Diane Trout	Fix initialization of QtAssistant	commit \| commitdiff \| tree
2006-10-12	Diane Trout	better glyph offset computation	commit \| commitdiff \| tree
2006-10-12	Diane Trout	does createLocalAlignment work for a 3 way?	commit \| commitdiff \| tree
2006-10-12	Diane Trout	add implementation for save motif menu item	commit \| commitdiff \| tree
2006-10-12	Diane Trout	Make help a bit more reliable	commit \| commitdiff \| tree
2006-10-11	Diane Trout	lookup python code with c++	commit \| commitdiff \| tree
2006-10-11	Diane Trout	Validate motif input	commit \| commitdiff \| tree
2006-10-11	Diane Trout	add Mussa::save_motif()	commit \| commitdiff \| tree
2006-10-11	Diane Trout	throw errors when spirit parsing fails	commit \| commitdiff \| tree
2006-10-11	Diane Trout	use spinboxes for the setup analysis dialog	commit \| commitdiff \| tree
2006-10-11	Diane Trout	a title of path("/my/silly/path") doesn't work on windows	commit \| commitdiff \| tree
2006-10-11	Diane Trout	use lines if a quad would be smaller than a pixel	commit \| commitdiff \| tree
2006-10-10	Diane Trout	initialize the motif_editor with analysis motifs	commit \| commitdiff \| tree
2006-10-10	Diane Trout	implement alphabet for sequence	commit \| commitdiff \| tree
2006-10-05	Diane Trout	length 1 segments should be drawn as lines	commit \| commitdiff \| tree
2006-10-05	Diane Trout	draw link lines with a width	commit \| commitdiff \| tree
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MUSSA multi-species alignment tool

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