woldlab.caltech.edu Git - mussa.git/shortlog

2006-07-06	Brandon King	Manual: UCSC Update, Copy sequence, Sub-analysis	commit \| commitdiff \| tree \| snapshot
2006-07-06	Diane Trout	Empty Subanalyses should not be run	commit \| commitdiff \| tree \| snapshot
2006-07-06	Diane Trout	Write cmake scripts for building the html manual	commit \| commitdiff \| tree \| snapshot
2006-07-05	Diane Trout	SequenceLocationModel::clear should actually clear...	commit \| commitdiff \| tree \| snapshot
2006-07-05	Diane Trout	remove MotifDetail:: from function in class declaration	commit \| commitdiff \| tree \| snapshot
2006-07-01	Diane Trout	SequenceLocation was being intialized with left,right	commit \| commitdiff \| tree \| snapshot
2006-07-01	Diane Trout	make sure subsequences have a species name	commit \| commitdiff \| tree \| snapshot
2006-07-01	Diane Trout	make subanalysis window editable	commit \| commitdiff \| tree \| snapshot
2006-07-01	Diane Trout	Implement UI for subanalysis mode	commit \| commitdiff \| tree \| snapshot
2006-06-30	Diane Trout	fix boost::python sequence interface	commit \| commitdiff \| tree \| snapshot
2006-06-30	Diane Trout	store motifs as sequences instead of strings	commit \| commitdiff \| tree \| snapshot
2006-06-30	Diane Trout	Allow disabling motifs	commit \| commitdiff \| tree \| snapshot
2006-06-30	Diane Trout	move edit motifs to the edit menu option	commit \| commitdiff \| tree \| snapshot
2006-06-29	Diane Trout	set_motifs should erase the previous motifs	commit \| commitdiff \| tree \| snapshot
2006-06-29	Diane Trout	allow specifying a name for a sequence	commit \| commitdiff \| tree \| snapshot
2006-06-29	Diane Trout	update the annotation grammer to make species name...	commit \| commitdiff \| tree \| snapshot
2006-06-29	Diane Trout	view sequence alignment is a more biologically useful...	commit \| commitdiff \| tree \| snapshot
2006-06-29	Diane Trout	break the core of add_motifs loop into a seperate function	commit \| commitdiff \| tree \| snapshot
2006-06-29	Diane Trout	Allow setting a name for a motif	commit \| commitdiff \| tree \| snapshot
2006-06-26	Diane Trout	Tailorization	commit \| commitdiff \| tree \| snapshot
2006-06-23	Diane Trout	Getting closer to a subanalysis mode	commit \| commitdiff \| tree \| snapshot
2006-06-21	Diane Trout	More progress toward subanalysis	commit \| commitdiff \| tree \| snapshot
2006-06-21	Diane Trout	use a specific exception when nextTo breaks	commit \| commitdiff \| tree \| snapshot
2006-06-20	Diane Trout	extend annotation names and types to allow punctuation	commit \| commitdiff \| tree \| snapshot
2006-06-17	Diane Trout	add view alignment to the sequence browser context...	commit \| commitdiff \| tree \| snapshot
2006-06-17	Diane Trout	make Sequence a subclass of std::string	commit \| commitdiff \| tree \| snapshot
2006-06-16	Diane Trout	remove unnecessary class decoration	commit \| commitdiff \| tree \| snapshot
2006-06-16	Diane Trout	ticket:104 fix some pointer problems with MussaAlignedW...	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	share one instance of the copySelectedSequenceAsFastaAction	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	Disabled code to try and get bundle path on OS X	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	Tell CMake not to include QtAssistant if not available	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	be more informative when DISPLAY isn't set under unix	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	try to make including QtAssistant optional	commit \| commitdiff \| tree \| snapshot
2006-06-15	Diane Trout	don't bother to build the old fltk code base	commit \| commitdiff \| tree \| snapshot
2006-06-14	Diane Trout	AMD64 build support	commit \| commitdiff \| tree \| snapshot
2006-06-14	Diane Trout	Make cmake happier about my target declariation order	commit \| commitdiff \| tree \| snapshot
2006-06-14	Diane Trout	implement selection context menu	commit \| commitdiff \| tree \| snapshot
2006-06-14	Diane Trout	reformat some braces	commit \| commitdiff \| tree \| snapshot
2006-06-13	Diane Trout	include the sequence coordinates when copying sequence	commit \| commitdiff \| tree \| snapshot
2006-06-13	Diane Trout	SequenceBrowser should handle the copying	commit \| commitdiff \| tree \| snapshot
2006-06-12	Brandon King	Manual: last modified update	commit \| commitdiff \| tree \| snapshot
2006-06-12	Brandon King	Manual: UCSC Genome Browser section	commit \| commitdiff \| tree \| snapshot
2006-06-12	Brandon King	Manual: UCSC Genome Browser screenshot pack	commit \| commitdiff \| tree \| snapshot
2006-06-12	Brandon King	alg/glseqbrowser.cpp:127: error: jump to case label	commit \| commitdiff \| tree \| snapshot
2006-06-12	Diane Trout	remove a useless debugging message	commit \| commitdiff \| tree \| snapshot
2006-06-12	Diane Trout	Actually copy our selected sequence to the clipboard	commit \| commitdiff \| tree \| snapshot
2006-06-10	Diane Trout	partial implementation of sequence track copy	commit \| commitdiff \| tree \| snapshot
2006-06-09	Diane Trout	More robust eol handling for Sequence::load_fasta	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	improve fasta parsing	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	minor ui label tweaks	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	minor improvements to python embedding code	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	Report error when sequence couldn't be loaded	commit \| commitdiff \| tree \| snapshot
2006-06-08	Diane Trout	Turn on more doxygen features	commit \| commitdiff \| tree \| snapshot
2006-06-07	Brandon King	Manual: Progress towards retrieval data for mussa section	commit \| commitdiff \| tree \| snapshot
2006-06-07	Brandon King	Manual Image Pack: UCSC Genome Broswer data retrieval...	commit \| commitdiff \| tree \| snapshot
2006-06-06	Diane Trout	keep track of how far through a seqcomp we've gotten	commit \| commitdiff \| tree \| snapshot
2006-06-03	Diane Trout	use Qt Signals & Slots for progress tracking	commit \| commitdiff \| tree \| snapshot
2006-06-02	Brandon King	Warning dialog upon Mussa Manual (QAssistant) error.	commit \| commitdiff \| tree \| snapshot
2006-05-27	Diane Trout	add callback for tracking analysis progress	commit \| commitdiff \| tree \| snapshot
2006-05-27	Diane Trout	rename [gset_soft_thres to [gs]et_soft_threshold]	commit \| commitdiff \| tree \| snapshot
2006-05-27	Diane Trout	configure cmake to include support for QtAssistant	commit \| commitdiff \| tree \| snapshot
2006-05-26	Brandon King	Variable declared locally elsewere... not needed.	commit \| commitdiff \| tree \| snapshot
2006-05-26	Brandon King	Mussagl Manual QAssistant Profile	commit \| commitdiff \| tree \| snapshot
2006-05-26	Brandon King	Mussagl Manual QAssistant Patch	commit \| commitdiff \| tree \| snapshot
2006-05-25	Diane Trout	let the keyboard reasonably control the browser window	commit \| commitdiff \| tree \| snapshot
2006-05-25	Diane Trout	add some documentation for glseqbrowser::viewport*	commit \| commitdiff \| tree \| snapshot
2006-05-25	Diane Trout	combine a declaration and assignment	commit \| commitdiff \| tree \| snapshot
2006-05-24	Diane Trout	set all the QAction pointers to 0	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Manual: View mussa alignment section + minor fixes	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Updated Mussagl launched screenshot.	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Manual: Spelling patch	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Screenshot image pack (for manual)	commit \| commitdiff \| tree \| snapshot
2006-05-23	Brandon King	Conservation tracks + IUPAC Neucleotide Table	commit \| commitdiff \| tree \| snapshot
2006-05-23	Diane Trout	rename ExtendedConservedPath for the old fltk code	commit \| commitdiff \| tree \| snapshot
2006-05-22	Diane Trout	we should be defaulting to qt 4.1.2	commit \| commitdiff \| tree \| snapshot
2006-05-22	Diane Trout	make linking python optional	commit \| commitdiff \| tree \| snapshot
2006-05-20	Diane Trout	turn color back on	commit \| commitdiff \| tree \| snapshot
2006-05-20	Diane Trout	ticket:62 fix local alignment	commit \| commitdiff \| tree \| snapshot
2006-05-20	Diane Trout	specify what version of cmake is required	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Manual: Motif/Annotation documentation	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Load Motif List png	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	New version of mussagl, updated screenshot.	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Manual: Main Window section added	commit \| commitdiff \| tree \| snapshot
2006-05-18	Brandon King	Screenshots for next patch of the manual.	commit \| commitdiff \| tree \| snapshot
2006-05-17	Brandon King	Updated manual	commit \| commitdiff \| tree \| snapshot
2006-05-18	Diane Trout	rename the python extension to _mussa.so	commit \| commitdiff \| tree \| snapshot
2006-05-18	Diane Trout	expose more of the sequence class to python	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	finish implementing annotation by sequence	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	switch to a character based spirit parser	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	try to read fasta blocks in the annotation file	commit \| commitdiff \| tree \| snapshot
2006-05-17	Diane Trout	use spirit parser for reading annot file	commit \| commitdiff \| tree \| snapshot
2006-05-16	Diane Trout	add annotations by sequence string	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	try to make setup.py multiplatform	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	minor tweaks for building mussa under setup.py	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	super simple mussa gui driver	commit \| commitdiff \| tree \| snapshot
2006-05-11	Diane Trout	build all of mussagl as a python extension	commit \| commitdiff \| tree \| snapshot
2006-05-10	Diane Trout	lets try letting python build mussa	commit \| commitdiff \| tree \| snapshot
2006-05-10	Diane Trout	increase the use of python in mussa	commit \| commitdiff \| tree \| snapshot
2006-05-04	Diane Trout	allow saving aligned window browser to image	commit \| commitdiff \| tree \| snapshot
2006-05-04	Diane Trout	show the name of the analysis loaded	commit \| commitdiff \| tree \| snapshot
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