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mussa.git
2006-09-21 Brandon KingMussagl Manual: Spelling and Grammar Fixes commit | commitdiff | tree | snapshot
2006-09-19 Diane Troutcatch possible segfault with get_sequence() commit | commitdiff | tree | snapshot
2006-09-18 Diane Troutneed a cassert commit | commitdiff | tree | snapshot
2006-09-18 Diane TroutRemember to include Platform to get PYTHON_LINK_LIBARIES commit | commitdiff | tree | snapshot
2006-09-18 Diane Troutask python what libraries we need to link with commit | commitdiff | tree | snapshot
2006-09-16 Diane TroutLoad saved analysis can open new windows commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutif you need to do a save as, you really don't need... commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutremember the last directory we were did something in commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutremove reporting the current path from the about box commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutuse the loaded analysis path as the default save path commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutalways save commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutkeep track of a subsequences parent commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutreport our "start/stop" location on a subsequence commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutuse an enum instead of a bool for strandedness commit | commitdiff | tree | snapshot
2006-09-15 Diane Troutmake our Color class serializable commit | commitdiff | tree | snapshot
2006-09-14 Diane Troutdo a better job of erasing the browser sidebars commit | commitdiff | tree | snapshot
2006-09-14 Diane Troutmake sure we show the start of our sequence name commit | commitdiff | tree | snapshot
2006-09-14 Diane TroutImplement an optional name in the motif parser commit | commitdiff | tree | snapshot
2006-09-13 Brandon KingMussa Manual: Todo comments commit | commitdiff | tree | snapshot
2006-09-13 Diane TroutMussaSetupDialog remembers previous load directory commit | commitdiff | tree | snapshot
2006-09-13 Diane Troutdefault saveAnalysisAs to users home directory commit | commitdiff | tree | snapshot
2006-09-12 Diane Troutwarn the user if we're going to replace an analysis commit | commitdiff | tree | snapshot
2006-09-12 Diane Troutimplement "typical" save and close conventions. commit | commitdiff | tree | snapshot
2006-09-12 Diane Trouttrack where our analysis is saved and if the analysis... commit | commitdiff | tree | snapshot
2006-09-12 Diane Troutimplement analysis save as dialog commit | commitdiff | tree | snapshot
2006-09-12 Diane Troutadd seq_forward commit | commitdiff | tree | snapshot
2006-09-09 Diane Troutmake really sure load_mupa has a file to parse. commit | commitdiff | tree | snapshot
2006-09-08 Diane Troutsubsequences now use offsets into the shared_ptr seq_string commit | commitdiff | tree | snapshot
2006-09-08 Diane Troutcatch a few more potential unchecked shared_ptr derefer... commit | commitdiff | tree | snapshot
2006-09-07 Diane Troutremove commented out string conversion commit | commitdiff | tree | snapshot
2006-09-07 Diane TroutFigured out how to serialize a shared_ptr<string> commit | commitdiff | tree | snapshot
2006-09-07 Diane Troutgo back to using const char * in seqcomp commit | commitdiff | tree | snapshot
2006-08-30 Diane Troutuse shared_ptr to store the sequence string commit | commitdiff | tree | snapshot
2006-08-29 Diane Troutput basepair alphabets into the Sequence class commit | commitdiff | tree | snapshot
2006-08-29 Diane Troutgo back to sequence being its own class commit | commitdiff | tree | snapshot
2006-08-31 Diane TroutThere's something wrong with the Qt tests, skip for... commit | commitdiff | tree | snapshot
2006-08-31 Diane Troutfedora needs -lutil for python to build commit | commitdiff | tree | snapshot
2006-08-31 Diane Troutneed to #include <cassert> if i'm going to use asserts commit | commitdiff | tree | snapshot
2006-08-29 Diane Troutforgot namespace declaration on some conditional code commit | commitdiff | tree | snapshot
2006-08-24 Diane Troutstart trying to figure out where the documentation is commit | commitdiff | tree | snapshot
2006-08-24 Diane Troutupdate sequence serialization to support the xml archive commit | commitdiff | tree | snapshot
2006-08-23 Diane TroutAllow changing the name for a sequence in the sequence... commit | commitdiff | tree | snapshot
2006-08-22 Diane Troutcatch the other spurious class decoration commit | commitdiff | tree | snapshot
2006-08-22 Diane Troutremove unnecessary class member decoration commit | commitdiff | tree | snapshot
2006-08-14 Brandon KingMussa Icon: Windows .ico version commit | commitdiff | tree | snapshot
2006-08-12 Diane TroutFix merge issues with the win32 library patch commit | commitdiff | tree | snapshot
2006-08-12 Brandon KingReorder libraries for win32 commit | commitdiff | tree | snapshot
2006-08-12 Brandon KingTell unittests to use native file convention for EXAMPL... commit | commitdiff | tree | snapshot
2006-08-11 Diane TroutUpdate SequenceDescription to have signal/slots commit | commitdiff | tree | snapshot
2006-08-11 Diane Troutdo a better job of grouping seqbrowser sidebar information. commit | commitdiff | tree | snapshot
2006-08-10 Diane TroutTry alpha blending the conservation paths commit | commitdiff | tree | snapshot
2006-08-10 Diane Troutremove the useless hide motif button. commit | commitdiff | tree | snapshot
2006-08-10 Diane TroutLet the annotation parser skip html tags commit | commitdiff | tree | snapshot
2006-08-09 Diane TroutImplement serialize for sequence commit | commitdiff | tree | snapshot
2006-08-09 Diane Troutstart breaking save out from Mussa::analyze() commit | commitdiff | tree | snapshot
2006-08-09 Diane TroutAdd documentation about Mussa::soft_threshold commit | commitdiff | tree | snapshot
2006-08-09 Diane Troutremove mck3test.museq and .muway commit | commitdiff | tree | snapshot
2006-08-09 Diane TroutAdd serialization library to FindBoost commit | commitdiff | tree | snapshot
2006-08-09 Diane Troutadd dirty flag commit | commitdiff | tree | snapshot
2006-08-09 Diane Troutchange from cout to clog in some commented out debuggin... commit | commitdiff | tree | snapshot
2006-08-02 Brandon KingDefine analysis scroll area implementation commit | commitdiff | tree | snapshot
2006-07-29 Diane Troutset mussa analysis name in MussaSetupWidget commit | commitdiff | tree | snapshot
2006-07-28 Diane Troutupdate osxdist to point to qt 4.1.4 commit | commitdiff | tree | snapshot
2006-07-28 Diane Troutfix ticket:115 display sequences in order added commit | commitdiff | tree | snapshot
2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BI... commit | commitdiff | tree | snapshot
2006-07-28 Diane TroutSince building with cmake 2.2 didn't work up the requir... commit | commitdiff | tree | snapshot
2006-07-28 Diane Troutset current doc url commit | commitdiff | tree | snapshot
2006-07-28 Diane TroutImplement a convienence class for accessing python... commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutrename glseq.width to glseq.size in gl.py commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutupdate gl.py to show how to add an annotation commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutadd annot and motif classes to python interface commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutupdate gl.py glut example code commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutuse QT_QTASSISTANT_FOUND when detecting QtAssistant commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutfix problems instantiating mussa.GlSequence commit | commitdiff | tree | snapshot
2006-07-27 Diane Troutmake it possible to build mussa with python commit | commitdiff | tree | snapshot
2006-07-26 Diane TroutUse BOOST_PYTHON_LIBRARY as python library guard commit | commitdiff | tree | snapshot
2006-07-22 Diane Troutuniversal ld wrapper script commit | commitdiff | tree | snapshot
2006-07-21 Diane TroutBuild universal binaries on OS X commit | commitdiff | tree | snapshot
2006-07-19 Brandon KingWindows XP support patch by Diane commit | commitdiff | tree | snapshot
2006-07-15 Diane TroutProvide an app icon on OS X commit | commitdiff | tree | snapshot
2006-07-15 Diane Troutinclude images used for bioinformatics journal club... commit | commitdiff | tree | snapshot
2006-07-13 Diane Troutstart the trivial sequence filter commit | commitdiff | tree | snapshot
2006-07-11 Diane Troutignore another build name commit | commitdiff | tree | snapshot
2006-07-11 Diane Troutupdate os x building tools commit | commitdiff | tree | snapshot
2006-07-11 Diane TroutTest for RST2HTML and BOOST_PYTHON_LIB commit | commitdiff | tree | snapshot
2006-07-11 Diane Troutfix spelling error commit | commitdiff | tree | snapshot
2006-07-10 Diane TroutPresentation for bioinformatics club. commit | commitdiff | tree | snapshot
2006-07-08 Diane Troutstart of presentation for bioinformatics journal club... commit | commitdiff | tree | snapshot
2006-07-06 Brandon KingManual: Motif update commit | commitdiff | tree | snapshot
2006-07-06 Brandon KingManual: UCSC Update, Copy sequence, Sub-analysis commit | commitdiff | tree | snapshot
2006-07-06 Diane TroutEmpty Subanalyses should not be run commit | commitdiff | tree | snapshot
2006-07-06 Diane TroutWrite cmake scripts for building the html manual commit | commitdiff | tree | snapshot
2006-07-05 Diane TroutSequenceLocationModel::clear should actually clear... commit | commitdiff | tree | snapshot
2006-07-05 Diane Troutremove MotifDetail:: from function in class declaration commit | commitdiff | tree | snapshot
2006-07-01 Diane TroutSequenceLocation was being intialized with left,right commit | commitdiff | tree | snapshot
2006-07-01 Diane Troutmake sure subsequences have a species name commit | commitdiff | tree | snapshot
2006-07-01 Diane Troutmake subanalysis window editable commit | commitdiff | tree | snapshot
2006-07-01 Diane TroutImplement UI for subanalysis mode commit | commitdiff | tree | snapshot
2006-06-30 Diane Troutfix boost::python sequence interface commit | commitdiff | tree | snapshot
2006-06-30 Diane Troutstore motifs as sequences instead of strings commit | commitdiff | tree | snapshot
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MUSSA multi-species alignment tool