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* Fixed urls for result_fc_cnm_eland_lane and summaryhtm_fc_cnm functions.
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
2009-05-11
Diane Trout
Fix parameter list for base class.
tree
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commitdiff
2009-05-05
Diane Trout
Handle lanes that were only sequenced.
tree
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commitdiff
2009-05-05
Diane Trout
Return NaN, NaN if a mean +/- deviation value was undef...
tree
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commitdiff
2009-04-24
Diane Trout
add --clean option to runfolder
tree
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commitdiff
2009-03-31
Diane Trout
Use the image directory name to detect what type of...
tree
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commitdiff
2009-03-31
Diane Trout
Don't attempt to save xml for a matrix in firecrest...
tree
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commitdiff
2009-03-31
Diane Trout
remove some useless debugging print statements
tree
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commitdiff
2009-03-30
Diane Trout
Add unit test to check that the crosstalk matrix was...
tree
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commitdiff
2009-03-30
Diane Trout
IPAR detection is more reliable than firecrest so do...
tree
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commitdiff
2009-03-30
Diane Trout
Allow specifying a run instead of just scanning the...
tree
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commitdiff
2009-03-28
Diane Trout
For pipeline 1.1rc1 or 1.3.2, look for the matrix files...
tree
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commitdiff
2009-03-28
Diane Trout
Move sample data from simulate_runfolder into testdata
tree
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commitdiff
2009-03-18
Diane Trout
Generate a gerald config file, even if the genome is...
tree
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commitdiff
2009-03-16
Diane Trout
Parse runfolders generated with IPAR 1.3 and pipeline...
tree
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commitdiff
2009-03-10
Diane Trout
Improve support for eland searching a single fasta...
tree
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commitdiff
2009-02-17
Diane Trout
remove cfg_defaults. It was part of an idea I was start...
tree
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commitdiff
2009-02-13
Diane Trout
save longer comment describing change
tree
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commitdiff
2009-02-13
Diane Trout
Aparently some more recent version of multi eland stopped
tree
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commitdiff
2009-02-13
Diane Trout
Merge in the library list, detail, and results download...
tree
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commitdiff
2009-02-12
Diane Trout
make our API docstrings more epydoc friendly
tree
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commitdiff
2009-02-12
Diane Trout
Add load_pipeline_run_xml, a little function that feeds...
tree
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commitdiff
2009-01-30
Diane Trout
Try to make runfolder results extraction more robust
tree
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commitdiff
2009-01-30
Diane Trout
Update to not hard code the config file name and the...
tree
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commitdiff
2009-01-06
Diane Trout
Look in Temp directories for some of the files we have...
tree
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commitdiff
2008-12-24
Diane Trout
Handle paired-end eland files.
tree
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commitdiff
2008-12-24
Diane Trout
remove a debug print statement
tree
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commitdiff
2008-12-23
Diane Trout
change from hand coded formatting functions to the...
tree
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commitdiff
2008-12-23
Diane Trout
Use the right URLError attribute names for error messages
tree
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commitdiff
2008-12-18
Diane Trout
rename config file to something that doesn't include...
tree
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commitdiff
2008-12-10
Diane Trout
The summary parsing code now seems to handle paired...
tree
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commitdiff
2008-12-09
Diane Trout
Test 1.1rc1 style runs, which unfortunately require...
tree
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commitdiff
2008-12-03
Diane Trout
Add test code to see if runfolder can handle something...
tree
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commitdiff
2008-12-03
Diane Trout
Add code to create a paired end Summary.htm file
tree
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commitdiff
2008-12-03
Diane Trout
Store the bustard pathname when searching for run folders
tree
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commitdiff
2008-11-06
Diane Trout
Updated ipar_100 test case to deal with the using U0...
tree
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commitdiff
2008-11-06
Diane Trout
Process eland extended (or multi) read files.
tree
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commitdiff
2008-10-30
Diane Trout
The htsworkflow.pipelines.gerald module was getting...
tree
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commitdiff
2008-10-30
Diane Trout
Add support for scanning for results in the IPAR directory.
tree
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commitdiff
2008-10-15
Diane Trout
rename pipeline to pipelines to imply that we can proce...
tree
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commitdiff