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Merge branch 'django1.4'
[htsworkflow.git]
/
htsworkflow
/
2012-06-27
Diane Trout
Only allow one default cluster station or sequencer...
tree
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commitdiff
2012-06-27
Diane Trout
Only allow one default cluster station or sequencer...
tree
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commitdiff
2012-06-27
Diane Trout
Auto-generate a secret key for django and store in...
tree
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commitdiff
2012-06-26
Diane Trout
Add the ability to specify default cluster station...
tree
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commitdiff
2012-06-26
Diane Trout
reformatting to be more pep8 like
tree
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commitdiff
2012-06-25
Diane Trout
Convert dictionary comprehension to dict(generator...
tree
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commitdiff
2012-06-25
Diane Trout
Adapt select strike-out widget to django 1.2
tree
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commitdiff
2012-06-23
Diane Trout
Forgot to add the css file to add 'active' state to...
tree
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commitdiff
2012-06-23
Diane Trout
Add an 'active' state to the sequencers.
tree
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commitdiff
2012-06-22
Diane Trout
Show software version information on datarun page
tree
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commitdiff
2012-06-22
Diane Trout
Save pipeline version information from run_xml into...
tree
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commitdiff
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-06-15
Diane Trout
Move typeof. I think its now getting parsed by rapper...
tree
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commitdiff
2012-06-14
Diane Trout
Import information from NCBI SRA into a RDF model.
tree
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commitdiff
2012-06-12
Diane Trout
Add a software (name) property to firecrest, ipar,...
tree
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commitdiff
2012-06-11
Diane Trout
Return a gerald version number as a number and not...
tree
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commitdiff
2012-06-07
Diane Trout
Add instrument ID and model to sequencer table
tree
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commitdiff
2012-06-02
Diane Trout
Split lane parameters into seperate classes for GA...
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
replace tab charcter with spaces in the multiplex index...
live
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
Fix Multiplex index pluralization
tree
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commitdiff
2012-05-23
Diane Trout
Generate html reports when doing sparql queries with...
tree
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commitdiff
2012-05-16
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-16
Diane Trout
Tweak some test code to work with librdf 1.0.10
tree
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commitdiff
2012-05-16
Diane Trout
update summary.py to extract data from HiSeq runs.
tree
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commitdiff
2012-05-15
Diane Trout
Fix bugs introduduced by the improved HiSeq runfolder...
tree
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commitdiff
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-12
Diane Trout
Properly constructing the geo soft file really needed...
tree
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commitdiff
2012-05-12
Diane Trout
Prepare for submitting data to geo by:
tree
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commitdiff
2012-05-10
Diane Trout
Minimal changes needed to get raw data archived for...
tree
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commitdiff
2012-05-04
Diane Trout
100% test coverage for alphanum.py
tree
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commitdiff
2012-05-03
Diane Trout
Rename a cell-line since we're now using "treatment...
tree
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commitdiff
2012-04-17
Diane Trout
Rename global logger to LOGGER to be more PEP8 like
tree
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commitdiff
2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-04-12
Diane Trout
Extend the adapter id field to support the dual indexed...
tree
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commitdiff
2012-04-11
Diane Trout
Start developing GEO SOFT submission tool.
tree
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commitdiff
2012-04-11
Diane Trout
Move code out of ucsc_gather and into the htsworkflow...
tree
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commitdiff
2012-03-29
Diane Trout
Change to using django templates for generating condor...
tree
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commitdiff
2012-03-29
Diane Trout
Improve a settings error message, as it was confusing...
tree
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commitdiff
2012-03-27
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-03-26
Diane Trout
Switch to lxml for parsing the summary file.
tree
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commitdiff
2012-03-23
Diane Trout
Apparently I forgot to remove a parameter why creating...
tree
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commitdiff
2012-03-22
Diane Trout
Messed up the RDFa for specifying that a library was...
tree
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commitdiff
2012-03-22
Diane Trout
Use name instead of library_name as the property descri...
tree
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commitdiff
2012-03-08
Diane Trout
Actually if I provide an output file, I want to write...
tree
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commitdiff
2012-03-07
Diane Trout
Always include the python path when generating the...
tree
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commitdiff
2012-03-07
Diane Trout
Forgot to add split attribute to __eq__ test.
tree
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commitdiff
2012-03-07
Diane Trout
Add extract HiSeq project based split fastq files to...
tree
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commitdiff
2012-03-06
Diane Trout
Support scanning for split fastq files generated by...
tree
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commitdiff
2012-03-06
Diane Trout
Add module to convert multiple fastq files into a singl...
tree
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commitdiff
2012-03-06
Diane Trout
Add ability to print out json structures returned by...
tree
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commitdiff
2012-03-05
Diane Trout
Use named tuple for sequence flowcell/start/stop/projec...
tree
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commitdiff
2012-03-02
Diane Trout
Core functions for saving and finding fastq files gener...
tree
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commitdiff
2012-03-01
Diane Trout
Remove some debug prints
tree
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commitdiff
2012-03-01
Diane Trout
Simulate a HiSeq runfolder.
tree
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commitdiff
2012-01-30
Diane Trout
Add ability to refresh library data from our htsw server
tree
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commitdiff
2012-01-25
Diane Trout
Added scanning for libraries that aren't attached to...
tree
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commitdiff
2012-01-25
Diane Trout
split a function into two. (A query execute function...
tree
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commitdiff
2012-01-25
Diane Trout
Changed pprint daf attributes to a pformat output via...
tree
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commitdiff
2012-01-23
Diane Trout
Don't use assertIn as older ubuntu python doesn't have it
tree
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commitdiff
2012-01-23
Diane Trout
Invalid library IDs should 404, not return a useless...
tree
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commitdiff
2011-12-20
Diane Trout
Handle dateTime timestamps in RDF.Nodes
tree
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commitdiff
2011-12-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-12-20
Diane Trout
whitespace reformatting
tree
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commitdiff
2011-12-20
Diane Trout
Remove eXecute bit from modules
tree
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commitdiff
2011-12-20
Diane Trout
Add in test code for testing downloading the ucsc downl...
tree
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commitdiff
2011-12-20
Diane Trout
Try to figure out where UCSC is hosting our submitted...
tree
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commitdiff
2011-11-22
Diane Trout
Add a method to override command used to convert srf...
tree
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commitdiff
2011-11-07
Diane Trout
Use Node.uri instead of manually trimming off RDF.Node...
tree
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commitdiff
2011-11-07
Diane Trout
Function generating index text was assuming there'd...
tree
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commitdiff
2011-11-07
Diane Trout
Update library adapter type initial data to match lorie...
tree
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commitdiff
2011-11-07
Diane Trout
Merge in removal of queuecommand sleep.
tree
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commitdiff
2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
tree
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commitdiff
2011-11-04
Diane Trout
Lorian renamed some of the libraries, change our hard...
tree
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commitdiff
2011-10-21
Diane Trout
Yes generate regular gerald config file.
tree
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commitdiff
2011-10-18
Diane Trout
Add library adapter type to filter choices,
tree
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commitdiff
2011-10-13
Diane Trout
Allow replicates 5 & 6
tree
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commitdiff
2011-10-11
Diane Trout
Use "not run" instead of todo to describe libraries...
tree
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commitdiff
2011-10-11
Diane Trout
Add a todo view that shows only libraries that have no
tree
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commitdiff
2011-10-10
Diane Trout
Remove ReadPrep and Thumbnail_Images being generated...
tree
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commitdiff
2011-10-10
Diane Trout
Don't need to duplicate %t tile in srf command
tree
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commitdiff
2011-10-06
Diane Trout
Add the ability to specify a flowcell id instead of...
tree
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commitdiff
2011-10-04
Diane Trout
Add support for flowcells analyzed with Casava 1.7
tree
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commitdiff
2011-09-30
Diane Trout
Configure daf variables in only one place. (daf.py)
tree
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commitdiff
2011-09-30
Diane Trout
Add support for new "extraVariables" term in DAF.
tree
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commitdiff
2011-09-22
Diane Trout
Mark library & flowcell as a type in RDF.
tree
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commitdiff
2011-09-21
Diane Trout
Switch from beautifulsoup to lxml, now that I know...
tree
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commitdiff
2011-09-19
Diane Trout
Output samples that don't have index sequence as well.
tree
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commitdiff
2011-09-19
Diane Trout
Python 2.6's DictWriter doesn't have writeheader, so...
tree
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commitdiff
2011-09-17
Diane Trout
Disable csrf protection for the json urls
tree
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commitdiff
2011-09-17
Diane Trout
Add support for tracking the multiplex index sequence.
0.5.4
tree
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commitdiff
2011-09-12
Diane Trout
Add support for first-gen HiSeq flowcells (e.g. ABXX)
tree
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commitdiff
2011-09-08
Diane Trout
Django 1.1's csrf protection appears to be handled...
0.5.3
tree
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commitdiff
2011-09-08
Diane Trout
Add links to the admin page on the public pages if...
tree
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commitdiff
2011-09-08
Diane Trout
Make it so the login link redirects you back to the...
tree
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commitdiff
2011-09-08
Diane Trout
Emacs stripped off trailing whitespace
tree
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commitdiff
2011-09-07
Diane Trout
Add link to admin page to flowcell & library pages...
tree
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commitdiff
2011-09-07
Diane Trout
Remove margin-right command as it was making a giant...
tree
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