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Handle subseq when the parent is on the minus strand
2006-07-01
Diane Trout
make sure subsequences have a species name
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tree
2006-07-01
Diane Trout
make subanalysis window editable
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2006-07-01
Diane Trout
Implement UI for subanalysis mode
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tree
2006-06-30
Diane Trout
fix boost::python sequence interface
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2006-06-30
Diane Trout
store motifs as sequences instead of strings
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tree
2006-06-30
Diane Trout
Allow disabling motifs
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tree
2006-06-30
Diane Trout
move edit motifs to the edit menu option
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tree
2006-06-29
Diane Trout
set_motifs should erase the previous motifs
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tree
2006-06-29
Diane Trout
allow specifying a name for a sequence
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tree
2006-06-29
Diane Trout
update the annotation grammer to make species name...
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2006-06-29
Diane Trout
view sequence alignment is a more biologically useful...
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tree
2006-06-29
Diane Trout
break the core of add_motifs loop into a seperate function
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tree
2006-06-29
Diane Trout
Allow setting a name for a motif
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tree
2006-06-26
Diane Trout
Tailorization
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tree
2006-06-23
Diane Trout
Getting closer to a subanalysis mode
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2006-06-21
Diane Trout
More progress toward subanalysis
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tree
2006-06-21
Diane Trout
use a specific exception when nextTo breaks
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tree
2006-06-20
Diane Trout
extend annotation names and types to allow punctuation
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2006-06-17
Diane Trout
add view alignment to the sequence browser context...
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tree
2006-06-17
Diane Trout
make Sequence a subclass of std::string
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2006-06-16
Diane Trout
remove unnecessary class decoration
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tree
2006-06-16
Diane Trout
ticket:104 fix some pointer problems with MussaAlignedWindow
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2006-06-15
Diane Trout
share one instance of the copySelectedSequenceAsFastaAction
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2006-06-15
Diane Trout
Disabled code to try and get bundle path on OS X
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2006-06-15
Diane Trout
Tell CMake not to include QtAssistant if not available
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tree
2006-06-15
Diane Trout
be more informative when DISPLAY isn't set under unix
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2006-06-15
Diane Trout
try to make including QtAssistant optional
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tree
2006-06-15
Diane Trout
don't bother to build the old fltk code base
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tree
2006-06-14
Diane Trout
AMD64 build support
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tree
2006-06-14
Diane Trout
Make cmake happier about my target declariation order
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tree
2006-06-14
Diane Trout
implement selection context menu
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2006-06-14
Diane Trout
reformat some braces
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2006-06-13
Diane Trout
include the sequence coordinates when copying sequence
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2006-06-13
Diane Trout
SequenceBrowser should handle the copying
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2006-06-12
Diane Trout
remove a useless debugging message
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2006-06-12
Diane Trout
Actually copy our selected sequence to the clipboard
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2006-06-10
Diane Trout
partial implementation of sequence track copy
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2006-06-09
Diane Trout
More robust eol handling for Sequence::load_fasta
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tree
2006-06-08
Diane Trout
improve fasta parsing
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tree
2006-06-08
Diane Trout
minor ui label tweaks
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tree
2006-06-08
Diane Trout
minor improvements to python embedding code
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tree
2006-06-08
Diane Trout
Report error when sequence couldn't be loaded
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tree
2006-06-08
Diane Trout
Turn on more doxygen features
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2006-06-06
Diane Trout
keep track of how far through a seqcomp we've gotten
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tree
2006-06-03
Diane Trout
use Qt Signals & Slots for progress tracking
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2006-05-27
Diane Trout
add callback for tracking analysis progress
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2006-05-27
Diane Trout
rename [gset_soft_thres to [gs]et_soft_threshold]
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2006-05-27
Diane Trout
configure cmake to include support for QtAssistant
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2006-05-25
Diane Trout
let the keyboard reasonably control the browser window
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2006-05-25
Diane Trout
add some documentation for glseqbrowser::viewport*
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2006-05-25
Diane Trout
combine a declaration and assignment
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2006-05-24
Diane Trout
set all the QAction pointers to 0
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2006-05-23
Diane Trout
rename ExtendedConservedPath for the old fltk code
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2006-05-22
Diane Trout
we should be defaulting to qt 4.1.2
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2006-05-22
Diane Trout
make linking python optional
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2006-05-20
Diane Trout
turn color back on
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2006-05-20
Diane Trout
ticket:62 fix local alignment
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2006-05-20
Diane Trout
specify what version of cmake is required
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2006-05-18
Diane Trout
rename the python extension to _mussa.so
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2006-05-18
Diane Trout
expose more of the sequence class to python
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2006-05-17
Diane Trout
finish implementing annotation by sequence
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tree
2006-05-17
Diane Trout
switch to a character based spirit parser
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2006-05-17
Diane Trout
try to read fasta blocks in the annotation file
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2006-05-17
Diane Trout
use spirit parser for reading annot file
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2006-05-16
Diane Trout
add annotations by sequence string
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2006-05-11
Diane Trout
try to make setup.py multiplatform
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2006-05-11
Diane Trout
minor tweaks for building mussa under setup.py
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2006-05-11
Diane Trout
super simple mussa gui driver
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2006-05-11
Diane Trout
build all of mussagl as a python extension
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2006-05-10
Diane Trout
lets try letting python build mussa
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2006-05-10
Diane Trout
increase the use of python in mussa
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2006-05-04
Diane Trout
allow saving aligned window browser to image
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2006-05-04
Diane Trout
show the name of the analysis loaded
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2006-05-04
Diane Trout
allow opening multiple MussaWindows
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2006-04-19
Diane Trout
win32 paths need some conversion
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2006-04-18
Diane Trout
try to get mussagl to build on win32
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2006-04-18
Diane Trout
implement commandline arguments for makedmg
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2006-04-13
Diane Trout
the fasta error message should include the filename
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2006-04-13
Diane Trout
fix ticket:83 throw an error when we don't have a fasta...
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2006-04-13
Diane Trout
create an options structure to indicate if we need...
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2006-04-12
Diane Trout
ticket:85 fix, extend code crashes with 1 path
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2006-04-12
Diane Trout
use a custom target for python extension
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2006-04-12
Diane Trout
record cmake commands to deal with some dependency...
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2006-04-12
Diane Trout
default to building a debug version
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2006-04-12
Diane Trout
put qt gui launching code into a function
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2006-04-12
Diane Trout
AMD64 needs -fPIC for mussa_core
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2006-04-12
Diane Trout
put spaces instead of <TAB> on gui/module.mk
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2006-04-12
Diane Trout
ln -s is not that reliable
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2006-04-12
Diane Trout
build the python interface
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2006-04-11
Diane Trout
minor fixes for older buildsystems
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2006-04-08
Diane Trout
rename _LIB to _LIBRARY to be more consistent with...
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2006-04-07
Diane Trout
build fltk version and deal with debian qt4 weirdness
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2006-04-07
Diane Trout
make include gl.h multiplatform
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2006-04-07
Diane Trout
switch to using boost::filesystem
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2006-04-07
Diane Trout
put build environment support tools in makelib
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2006-04-06
Diane Trout
cmake setupfiles
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2006-04-04
Diane Trout
QSplitter has rendering problems on os x
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2006-04-04
Diane Trout
an int signal doesn't connect to a size_t slot
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2006-04-04
Diane Trout
allow making dmgs for things other than mussa
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2006-03-30
Diane Trout
allow running without using the gui
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