author | Sean Upchurch <sau@caltech.edu> | |
Fri, 8 Oct 2010 23:32:13 +0000 (16:32 -0700) | ||
committer | Sean Upchurch <sau@caltech.edu> | |
Fri, 8 Oct 2010 23:32:13 +0000 (16:32 -0700) | ||
commit | 5e4ae21098dba3d1edcf11e7279da0d84c3422e4 | |
tree | 76a5b5409f2e91c790ccf2924a65313495d3db1a | tree | snapshot |
MakeBamFromRds.py | [new file with mode: 0644] | blob |
MakeRdsFromBam.py | [new file with mode: 0644] | blob |
ReadDataset.py | [new file with mode: 0644] | blob |
__init__.py | [new file with mode: 0644] | blob |
altSpliceCounts.py | [new file with mode: 0755] | blob |
analyzego.py | [new file with mode: 0755] | blob |
bedtoregion.py | [new file with mode: 0755] | blob |
binstocdf.py | [new file with mode: 0755] | blob |
buildMatrix.py | [new file with mode: 0755] | blob |
buildrmaskdb.py | [new file with mode: 0755] | blob |
buildsnpdb.py | [new file with mode: 0755] | blob |
cdfdist.py | [new file with mode: 0755] | blob |
checkrmask.py | [new file with mode: 0755] | blob |
chiapet/.svn/entries | [new file with mode: 0644] | blob |
chiapet/.svn/text-base/__init__.py.svn-base | [new file with mode: 0644] | blob |
chiapet/.svn/text-base/linkers.fa.svn-base | [new file with mode: 0644] | blob |
chiapet/.svn/text-base/markLinkers.py.svn-base | [new file with mode: 0644] | blob |
chiapet/.svn/text-base/segregateLinkers.py.svn-base | [new file with mode: 0644] | blob |
chiapet/.svn/tmp/markLinkers.py.tmp | [new file with mode: 0644] | blob |
chiapet/__init__.py | [new file with mode: 0644] | blob |
chiapet/linkers.fa | [new file with mode: 0644] | blob |
chiapet/markLinkers.py | [new file with mode: 0644] | blob |
chiapet/segregateLinkers.py | [new file with mode: 0644] | blob |
chkSNPrmask.py | [new file with mode: 0755] | blob |
chksnp.py | [new file with mode: 0755] | blob |
colsum.py | [new file with mode: 0755] | blob |
combineRPKMs.py | [new file with mode: 0755] | blob |
combinerds.py | [new file with mode: 0755] | blob |
commoncode.py | [new file with mode: 0755] | blob |
crossmatch.py | [new file with mode: 0755] | blob |
distalPairs.py | [new file with mode: 0755] | blob |
docs/ERANGE.copyright | [new file with mode: 0644] | blob |
docs/README.build-rds | [new file with mode: 0644] | blob |
docs/README.chip-seq | [new file with mode: 0644] | blob |
docs/README.rna-esnp | [new file with mode: 0644] | blob |
docs/README.rna-seq | [new file with mode: 0644] | blob |
docs/README.rnapath | [new file with mode: 0644] | blob |
docs/RNA-seq.analysisSteps.txt | [new file with mode: 0644] | blob |
docs/buildMatrix.sh | [new file with mode: 0644] | blob |
docs/partition.sh | [new file with mode: 0644] | blob |
docs/regionCounts.sh | [new file with mode: 0644] | blob |
docs/runRNAPairedAnalysis.sh | [new file with mode: 0755] | blob |
docs/runSNPAnalysis.sh | [new file with mode: 0755] | blob |
docs/runStandardAnalysis.sh | [new file with mode: 0755] | blob |
docs/runStrandedAnalysis.sh | [new file with mode: 0755] | blob |
farPairs.py | [new file with mode: 0644] | blob |
featureIntersects.py | [new file with mode: 0755] | blob |
findMotifs.py | [new file with mode: 0755] | blob |
findall.py | [new file with mode: 0755] | blob |
fraction.py | [new file with mode: 0755] | blob |
geneDownstreamBins.py | [new file with mode: 0755] | blob |
geneLocusBins.py | [new file with mode: 0755] | blob |
geneLocusCounts.py | [new file with mode: 0755] | blob |
geneLocusPeaks.py | [new file with mode: 0755] | blob |
geneMrnaCounts.py | [new file with mode: 0755] | blob |
geneMrnaCountsWeighted.py | [new file with mode: 0755] | blob |
geneNeighbors.py | [new file with mode: 0755] | blob |
geneStallingBins.py | [new file with mode: 0755] | blob |
geneStartBins.py | [new file with mode: 0755] | blob |
geneUpstreamBins.py | [new file with mode: 0755] | blob |
getGOgenes.py | [new file with mode: 0755] | blob |
getNovelSNPs.py | [new file with mode: 0755] | blob |
getSNPGeneInfo.py | [new file with mode: 0755] | blob |
getSNPs.py | [new file with mode: 0755] | blob |
getallNRSE.py | [new file with mode: 0755] | blob |
getallgenes.py | [new file with mode: 0755] | blob |
getallsites.py | [new file with mode: 0755] | blob |
getfasta.py | [new file with mode: 0755] | blob |
getgosig.py | [new file with mode: 0755] | blob |
getmers.py | [new file with mode: 0755] | blob |
getsplicefa.py | [new file with mode: 0755] | blob |
gfftocis.py | [new file with mode: 0644] | blob |
gointersects.py | [new file with mode: 0755] | blob |
hepg2.rds | [new file with mode: 0644] | blob |
intersects.py | [new file with mode: 0755] | blob |
listGeneFeatures.py | [new file with mode: 0755] | blob |
makeGraphs.py | [new file with mode: 0644] | blob |
makeSNPtrack.py | [new file with mode: 0755] | blob |
makebedfromrds.py | [new file with mode: 0755] | blob |
makerdsfrombed.py | [new file with mode: 0755] | blob |
makerdsfromblat.py | [new file with mode: 0755] | blob |
makerdsfrombowtie.py | [new file with mode: 0755] | blob |
makerdsfromeland2.py | [new file with mode: 0755] | blob |
makesitetrack.py | [new file with mode: 0755] | blob |
makewiggle.py | [new file with mode: 0755] | blob |
normalizeExpandedExonic.py | [new file with mode: 0644] | blob |
normalizeFinalExonic.py | [new file with mode: 0755] | blob |
partition.py | [new file with mode: 0755] | blob |
peakstoregion.py | [new file with mode: 0755] | blob |
plotbardist.py | [new file with mode: 0755] | blob |
plotnomogram.py | [new file with mode: 0755] | blob |
plotprofile.py | [new file with mode: 0755] | blob |
predictSpliceCount.py | [new file with mode: 0755] | blob |
profilebins.py | [new file with mode: 0755] | blob |
ratio.py | [new file with mode: 0755] | blob |
rdsmetadata.py | [new file with mode: 0755] | blob |
recordLog.py | [new file with mode: 0755] | blob |
regionBins.py | [new file with mode: 0755] | blob |
regionCounts.py | [new file with mode: 0755] | blob |
regionintersects.py | [new file with mode: 0755] | blob |
regiontobed.py | [new file with mode: 0755] | blob |
rnaAToIFilter.py | [new file with mode: 0644] | blob |
rnaEditing.py | [new file with mode: 0644] | blob |
rnafarPairs.py | [new file with mode: 0755] | blob |
rnapath/.svn/entries | [new file with mode: 0644] | blob |
rnapath/.svn/text-base/RNAPATH.py.svn-base | [new file with mode: 0644] | blob |
rnapath/.svn/text-base/__init__.py.svn-base | [new file with mode: 0644] | blob |
rnapath/.svn/text-base/processvelvet.py.svn-base | [new file with mode: 0644] | blob |
rnapath/.svn/tmp/RNAPATH.py.tmp | [new file with mode: 0644] | blob |
rnapath/.svn/tmp/processvelvet.py.tmp | [new file with mode: 0644] | blob |
rnapath/RNAPATH.py | [new file with mode: 0644] | blob |
rnapath/__init__.py | [new file with mode: 0644] | blob |
rnapath/processvelvet.py | [new file with mode: 0644] | blob |
scatterfields.py | [new file with mode: 0755] | blob |
siteintersects.py | [new file with mode: 0755] | blob |
stallCategory.py | [new file with mode: 0755] | blob |
test/testAnalyzeGO.py | [new file with mode: 0644] | blob |
test/testChkSNP_input.txt | [new file with mode: 0644] | blob |
test/testChksnp.py | [new file with mode: 0644] | blob |
test/testCommoncode.py | [new file with mode: 0644] | blob |
test/testErange.py | [new file with mode: 0644] | blob |
test/testGeneMrnaCounts.py | [new file with mode: 0644] | blob |
test/testGetFasta.py | [new file with mode: 0644] | blob |
test/testGetNovelSNPs.py | [new file with mode: 0644] | blob |
test/testGetSNPGeneInfo.py | [new file with mode: 0644] | blob |
test/testGetSNPs.py | [new file with mode: 0644] | blob |
test/testMakeBamFromRds.py | [new file with mode: 0644] | blob |
test/testMakeGraphs.py | [new file with mode: 0644] | blob |
test/testMakeRdsFromBam.py | [new file with mode: 0644] | blob |
test/testMakeSNPTrack.py | [new file with mode: 0644] | blob |
test/testMarkLinkers.py | [new file with mode: 0644] | blob |
test/testPeaksToRegion.py | [new file with mode: 0644] | blob |
test/testProcessVelvet.py | [new file with mode: 0644] | blob |
test/testRNAPATH.py | [new file with mode: 0644] | blob |
test/testReadDataset.py | [new file with mode: 0644] | blob |
test/testRnaAToIFilter.py | [new file with mode: 0644] | blob |
test/testRnaEditing.py | [new file with mode: 0644] | blob |
test/testTranscripts.py | [new file with mode: 0644] | blob |
test/testmakebedfromrds.py | [new file with mode: 0644] | blob |
transcripts.py | [new file with mode: 0755] | blob |
trimreads.py | [new file with mode: 0755] | blob |
utrChanges.py | [new file with mode: 0755] | blob |
weighMultireads.py | [new file with mode: 0755] | blob |