projects / erange.git / commit
| author | Sean Upchurch <sau@caltech.edu> | |
| Fri, 8 Oct 2010 23:32:13 +0000 (16:32 -0700) | ||
| committer | Sean Upchurch <sau@caltech.edu> | |
| Fri, 8 Oct 2010 23:32:13 +0000 (16:32 -0700) | ||
| commit | 5e4ae21098dba3d1edcf11e7279da0d84c3422e4 | |
| tree | 76a5b5409f2e91c790ccf2924a65313495d3db1a | tree | snapshot |
| MakeBamFromRds.py | [new file with mode: 0644] | blob |
| MakeRdsFromBam.py | [new file with mode: 0644] | blob |
| ReadDataset.py | [new file with mode: 0644] | blob |
| __init__.py | [new file with mode: 0644] | blob |
| altSpliceCounts.py | [new file with mode: 0755] | blob |
| analyzego.py | [new file with mode: 0755] | blob |
| bedtoregion.py | [new file with mode: 0755] | blob |
| binstocdf.py | [new file with mode: 0755] | blob |
| buildMatrix.py | [new file with mode: 0755] | blob |
| buildrmaskdb.py | [new file with mode: 0755] | blob |
| buildsnpdb.py | [new file with mode: 0755] | blob |
| cdfdist.py | [new file with mode: 0755] | blob |
| checkrmask.py | [new file with mode: 0755] | blob |
| chiapet/.svn/entries | [new file with mode: 0644] | blob |
| chiapet/.svn/text-base/__init__.py.svn-base | [new file with mode: 0644] | blob |
| chiapet/.svn/text-base/linkers.fa.svn-base | [new file with mode: 0644] | blob |
| chiapet/.svn/text-base/markLinkers.py.svn-base | [new file with mode: 0644] | blob |
| chiapet/.svn/text-base/segregateLinkers.py.svn-base | [new file with mode: 0644] | blob |
| chiapet/.svn/tmp/markLinkers.py.tmp | [new file with mode: 0644] | blob |
| chiapet/__init__.py | [new file with mode: 0644] | blob |
| chiapet/linkers.fa | [new file with mode: 0644] | blob |
| chiapet/markLinkers.py | [new file with mode: 0644] | blob |
| chiapet/segregateLinkers.py | [new file with mode: 0644] | blob |
| chkSNPrmask.py | [new file with mode: 0755] | blob |
| chksnp.py | [new file with mode: 0755] | blob |
| colsum.py | [new file with mode: 0755] | blob |
| combineRPKMs.py | [new file with mode: 0755] | blob |
| combinerds.py | [new file with mode: 0755] | blob |
| commoncode.py | [new file with mode: 0755] | blob |
| crossmatch.py | [new file with mode: 0755] | blob |
| distalPairs.py | [new file with mode: 0755] | blob |
| docs/ERANGE.copyright | [new file with mode: 0644] | blob |
| docs/README.build-rds | [new file with mode: 0644] | blob |
| docs/README.chip-seq | [new file with mode: 0644] | blob |
| docs/README.rna-esnp | [new file with mode: 0644] | blob |
| docs/README.rna-seq | [new file with mode: 0644] | blob |
| docs/README.rnapath | [new file with mode: 0644] | blob |
| docs/RNA-seq.analysisSteps.txt | [new file with mode: 0644] | blob |
| docs/buildMatrix.sh | [new file with mode: 0644] | blob |
| docs/partition.sh | [new file with mode: 0644] | blob |
| docs/regionCounts.sh | [new file with mode: 0644] | blob |
| docs/runRNAPairedAnalysis.sh | [new file with mode: 0755] | blob |
| docs/runSNPAnalysis.sh | [new file with mode: 0755] | blob |
| docs/runStandardAnalysis.sh | [new file with mode: 0755] | blob |
| docs/runStrandedAnalysis.sh | [new file with mode: 0755] | blob |
| farPairs.py | [new file with mode: 0644] | blob |
| featureIntersects.py | [new file with mode: 0755] | blob |
| findMotifs.py | [new file with mode: 0755] | blob |
| findall.py | [new file with mode: 0755] | blob |
| fraction.py | [new file with mode: 0755] | blob |
| geneDownstreamBins.py | [new file with mode: 0755] | blob |
| geneLocusBins.py | [new file with mode: 0755] | blob |
| geneLocusCounts.py | [new file with mode: 0755] | blob |
| geneLocusPeaks.py | [new file with mode: 0755] | blob |
| geneMrnaCounts.py | [new file with mode: 0755] | blob |
| geneMrnaCountsWeighted.py | [new file with mode: 0755] | blob |
| geneNeighbors.py | [new file with mode: 0755] | blob |
| geneStallingBins.py | [new file with mode: 0755] | blob |
| geneStartBins.py | [new file with mode: 0755] | blob |
| geneUpstreamBins.py | [new file with mode: 0755] | blob |
| getGOgenes.py | [new file with mode: 0755] | blob |
| getNovelSNPs.py | [new file with mode: 0755] | blob |
| getSNPGeneInfo.py | [new file with mode: 0755] | blob |
| getSNPs.py | [new file with mode: 0755] | blob |
| getallNRSE.py | [new file with mode: 0755] | blob |
| getallgenes.py | [new file with mode: 0755] | blob |
| getallsites.py | [new file with mode: 0755] | blob |
| getfasta.py | [new file with mode: 0755] | blob |
| getgosig.py | [new file with mode: 0755] | blob |
| getmers.py | [new file with mode: 0755] | blob |
| getsplicefa.py | [new file with mode: 0755] | blob |
| gfftocis.py | [new file with mode: 0644] | blob |
| gointersects.py | [new file with mode: 0755] | blob |
| hepg2.rds | [new file with mode: 0644] | blob |
| intersects.py | [new file with mode: 0755] | blob |
| listGeneFeatures.py | [new file with mode: 0755] | blob |
| makeGraphs.py | [new file with mode: 0644] | blob |
| makeSNPtrack.py | [new file with mode: 0755] | blob |
| makebedfromrds.py | [new file with mode: 0755] | blob |
| makerdsfrombed.py | [new file with mode: 0755] | blob |
| makerdsfromblat.py | [new file with mode: 0755] | blob |
| makerdsfrombowtie.py | [new file with mode: 0755] | blob |
| makerdsfromeland2.py | [new file with mode: 0755] | blob |
| makesitetrack.py | [new file with mode: 0755] | blob |
| makewiggle.py | [new file with mode: 0755] | blob |
| normalizeExpandedExonic.py | [new file with mode: 0644] | blob |
| normalizeFinalExonic.py | [new file with mode: 0755] | blob |
| partition.py | [new file with mode: 0755] | blob |
| peakstoregion.py | [new file with mode: 0755] | blob |
| plotbardist.py | [new file with mode: 0755] | blob |
| plotnomogram.py | [new file with mode: 0755] | blob |
| plotprofile.py | [new file with mode: 0755] | blob |
| predictSpliceCount.py | [new file with mode: 0755] | blob |
| profilebins.py | [new file with mode: 0755] | blob |
| ratio.py | [new file with mode: 0755] | blob |
| rdsmetadata.py | [new file with mode: 0755] | blob |
| recordLog.py | [new file with mode: 0755] | blob |
| regionBins.py | [new file with mode: 0755] | blob |
| regionCounts.py | [new file with mode: 0755] | blob |
| regionintersects.py | [new file with mode: 0755] | blob |
| regiontobed.py | [new file with mode: 0755] | blob |
| rnaAToIFilter.py | [new file with mode: 0644] | blob |
| rnaEditing.py | [new file with mode: 0644] | blob |
| rnafarPairs.py | [new file with mode: 0755] | blob |
| rnapath/.svn/entries | [new file with mode: 0644] | blob |
| rnapath/.svn/text-base/RNAPATH.py.svn-base | [new file with mode: 0644] | blob |
| rnapath/.svn/text-base/__init__.py.svn-base | [new file with mode: 0644] | blob |
| rnapath/.svn/text-base/processvelvet.py.svn-base | [new file with mode: 0644] | blob |
| rnapath/.svn/tmp/RNAPATH.py.tmp | [new file with mode: 0644] | blob |
| rnapath/.svn/tmp/processvelvet.py.tmp | [new file with mode: 0644] | blob |
| rnapath/RNAPATH.py | [new file with mode: 0644] | blob |
| rnapath/__init__.py | [new file with mode: 0644] | blob |
| rnapath/processvelvet.py | [new file with mode: 0644] | blob |
| scatterfields.py | [new file with mode: 0755] | blob |
| siteintersects.py | [new file with mode: 0755] | blob |
| stallCategory.py | [new file with mode: 0755] | blob |
| test/testAnalyzeGO.py | [new file with mode: 0644] | blob |
| test/testChkSNP_input.txt | [new file with mode: 0644] | blob |
| test/testChksnp.py | [new file with mode: 0644] | blob |
| test/testCommoncode.py | [new file with mode: 0644] | blob |
| test/testErange.py | [new file with mode: 0644] | blob |
| test/testGeneMrnaCounts.py | [new file with mode: 0644] | blob |
| test/testGetFasta.py | [new file with mode: 0644] | blob |
| test/testGetNovelSNPs.py | [new file with mode: 0644] | blob |
| test/testGetSNPGeneInfo.py | [new file with mode: 0644] | blob |
| test/testGetSNPs.py | [new file with mode: 0644] | blob |
| test/testMakeBamFromRds.py | [new file with mode: 0644] | blob |
| test/testMakeGraphs.py | [new file with mode: 0644] | blob |
| test/testMakeRdsFromBam.py | [new file with mode: 0644] | blob |
| test/testMakeSNPTrack.py | [new file with mode: 0644] | blob |
| test/testMarkLinkers.py | [new file with mode: 0644] | blob |
| test/testPeaksToRegion.py | [new file with mode: 0644] | blob |
| test/testProcessVelvet.py | [new file with mode: 0644] | blob |
| test/testRNAPATH.py | [new file with mode: 0644] | blob |
| test/testReadDataset.py | [new file with mode: 0644] | blob |
| test/testRnaAToIFilter.py | [new file with mode: 0644] | blob |
| test/testRnaEditing.py | [new file with mode: 0644] | blob |
| test/testTranscripts.py | [new file with mode: 0644] | blob |
| test/testmakebedfromrds.py | [new file with mode: 0644] | blob |
| transcripts.py | [new file with mode: 0755] | blob |
| trimreads.py | [new file with mode: 0755] | blob |
| utrChanges.py | [new file with mode: 0755] | blob |
| weighMultireads.py | [new file with mode: 0755] | blob |