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After implementing proper tests get a working implementation of runfolder name from...
[htsworkflow.git]
/
htsworkflow
/
submission
/
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-21
Diane Trout
Merge remote-tracking branch 'brisby/django1.4' into...
tree
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commitdiff
2013-10-21
Diane Trout
Pass additional information to the trackhub.
tree
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commitdiff
2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'master' into django1.4
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-11
Diane Trout
Make it possible to set a label on a track.
tree
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commitdiff
2013-10-09
Diane Trout
remove spurious newline
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commitdiff
2013-09-24
Diane Trout
Share more code to generate result tree.
tree
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commitdiff
2013-08-12
Diane Trout
Update test data for renamed library type.
tree
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commitdiff
2013-08-10
Diane Trout
Add sortOrder and filtering parameters to the trackhub.
tree
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commitdiff
2013-07-22
Diane Trout
Test changes to submission code.
tree
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commitdiff
2013-07-22
Diane Trout
Generate manifest.txt files for submitting to ENCODE3.
tree
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commitdiff
2013-07-22
Diane Trout
Add a generator that returns analysis nodes from a...
tree
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commitdiff
2013-07-18
Diane Trout
Add function to list the names for submissions from...
tree
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commitdiff
2013-07-08
Diane Trout
Update test to work with species -> species_name rename.
tree
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commitdiff
2013-07-03
Diane Trout
Generate manifest files for ENCODE3
tree
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commitdiff
2013-07-01
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-07-01
Diane Trout
Add the option to copy tree in addition to making a...
tree
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commitdiff
2013-07-01
Diane Trout
Initial attempt to start generating trackHubs and manif...
tree
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commitdiff
2013-06-28
Diane Trout
Add option to copy source files for a submission.
tree
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commitdiff
2013-06-18
Diane Trout
Further improve reliability of make_tree_from.
tree
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commitdiff
2013-06-18
Diane Trout
copy_tree_from wasn't actually making any symlinks.
tree
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commitdiff
2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
tree
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commitdiff
2013-02-01
Diane Trout
Forgot to import an exception I used
tree
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commitdiff
2012-12-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkfl...
tree
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commitdiff
2012-12-12
Diane Trout
Simplify linking fastq files to their library id.
tree
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commitdiff
2012-12-08
Diane Trout
Add a FastqName class to create and parse standardized...
tree
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commitdiff
2012-11-29
Diane Trout
Use unittest2's module hooks for setting up the django...
tree
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commitdiff
2012-11-29
Diane Trout
Remove prints that were being called in test code.
tree
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
tree
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commitdiff
2012-11-20
Diane Trout
Fix RDF schema problems with lane_number and species.
tree
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commitdiff
2012-11-14
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-27
Diane Trout
older librdf wanted to include type information when...
tree
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commitdiff
2012-09-27
Diane Trout
When collecting files for a geo submission, group on...
tree
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commitdiff
2012-09-25
Diane Trout
This might actually generate soft file with raw & suppl...
tree
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commitdiff
2012-09-24
Diane Trout
Merge changing lane_number to string and sequence findi...
tree
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commitdiff
2012-09-20
Diane Trout
Minor tweaks to deal with the older version of librdf...
tree
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commitdiff
2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
tree
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commitdiff
2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-18
Diane Trout
Progress using rdf model to link fastqs with flowcell...
tree
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-12
Diane Trout
Be more defensive if the database is missing some data...
tree
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commitdiff
2012-09-12
Diane Trout
fix a wrong variable name
tree
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commitdiff
2012-09-12
Diane Trout
Tweaks to make the sample gather query faster.
tree
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commitdiff
2012-09-10
Diane Trout
Use the same model for building fastqs as for building...
tree
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commitdiff
2012-09-01
Diane Trout
Import flowcell information into our model this allows
tree
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commitdiff
2012-08-31
Diane Trout
Older rdf library doesn't like unicode strings as nodes
tree
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commitdiff
2012-08-31
Diane Trout
Fix matching scanned sequence files to library IDs...
tree
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commitdiff
2012-08-31
Diane Trout
Inherit from MutableMapping for ResultMap.
tree
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commitdiff
2012-08-31
Diane Trout
Allow option to save/restore a sequence class to a...
tree
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commitdiff
2012-08-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-09
Diane Trout
Fix some mismatches between variable names in python...
tree
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commitdiff
2012-08-07
Diane Trout
Create a lane to file name turtle data file
tree
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
GEO wanted both files for a paired lane to be on a...
tree
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commitdiff
2012-07-24
Diane Trout
Get actual list of sequencers used for a library.
tree
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commitdiff
2012-06-25
Diane Trout
Convert dictionary comprehension to dict(generator...
tree
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commitdiff
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-06-14
Diane Trout
Import information from NCBI SRA into a RDF model.
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-12
Diane Trout
Properly constructing the geo soft file really needed...
tree
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commitdiff
2012-04-17
Diane Trout
Rename global logger to LOGGER to be more PEP8 like
tree
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commitdiff
2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-04-11
Diane Trout
Start developing GEO SOFT submission tool.
tree
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commitdiff
2012-04-11
Diane Trout
Move code out of ucsc_gather and into the htsworkflow...
tree
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commitdiff
2012-03-29
Diane Trout
Change to using django templates for generating condor...
tree
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commitdiff
2012-03-07
Diane Trout
Always include the python path when generating the...
tree
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commitdiff
2012-03-07
Diane Trout
Add extract HiSeq project based split fastq files to...
tree
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commitdiff
2012-01-25
Diane Trout
Added scanning for libraries that aren't attached to...
tree
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commitdiff
2012-01-25
Diane Trout
Changed pprint daf attributes to a pformat output via...
tree
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commitdiff
2012-01-23
Diane Trout
Don't use assertIn as older ubuntu python doesn't have it
tree
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commitdiff
2011-12-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-12-20
Diane Trout
Add in test code for testing downloading the ucsc downl...
tree
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commitdiff
2011-12-20
Diane Trout
Try to figure out where UCSC is hosting our submitted...
tree
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commitdiff
2011-11-07
Diane Trout
Use Node.uri instead of manually trimming off RDF.Node...
tree
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commitdiff
2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
tree
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commitdiff
2011-11-04
Diane Trout
Lorian renamed some of the libraries, change our hard...
tree
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commitdiff
2011-09-30
Diane Trout
Configure daf variables in only one place. (daf.py)
tree
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commitdiff
2011-09-30
Diane Trout
Add support for new "extraVariables" term in DAF.
tree
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commitdiff
2011-09-02
Diane Trout
Attempt to download DAF data for a encodesubmit submission
tree
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commitdiff
2011-07-29
Diane Trout
Make a test more robust to different versions of librdf
tree
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commitdiff
2011-07-28
Diane Trout
Examine the DAF to determine if the DDF needs to includ...
tree
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commitdiff
2011-07-20
Diane Trout
Stop copying attributes from library to a submission...
tree
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commitdiff
2011-07-07
Diane Trout
Library urls have a trailing /. make sure the test...
tree
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commitdiff
2011-07-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-30
Diane Trout
Older librdf gets cranky when mixing unicode & strings
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-29
Diane Trout
Further clean up ddf generation.
tree
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commitdiff
2011-06-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-22
Diane Trout
Slightly alter some tests to work with versions of...
tree
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commitdiff
2011-06-22
Diane Trout
Move parse_flowcell_id out of frontend.samples.results
tree
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commitdiff
2011-06-21
Diane Trout
Finish new RDF based ddf construction.
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commitdiff
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