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Attempt to be robust to not having an alignment in our RunXml file
[htsworkflow.git] / htsworkflow / submission /
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... tree | commitdiff
2013-10-21 Diane TroutPass additional information to the trackhub. tree | commitdiff
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-11 Diane TroutMake it possible to set a label on a track. tree | commitdiff
2013-10-09 Diane Troutremove spurious newline tree | commitdiff
2013-09-24 Diane TroutShare more code to generate result tree. tree | commitdiff
2013-08-12 Diane TroutUpdate test data for renamed library type. tree | commitdiff
2013-08-10 Diane TroutAdd sortOrder and filtering parameters to the trackhub. tree | commitdiff
2013-07-22 Diane TroutTest changes to submission code. tree | commitdiff
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. tree | commitdiff
2013-07-22 Diane TroutAdd a generator that returns analysis nodes from a... tree | commitdiff
2013-07-18 Diane TroutAdd function to list the names for submissions from... tree | commitdiff
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. tree | commitdiff
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 tree | commitdiff
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... tree | commitdiff
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... tree | commitdiff
2013-06-28 Diane TroutAdd option to copy source files for a submission. tree | commitdiff
2013-06-18 Diane TroutFurther improve reliability of make_tree_from. tree | commitdiff
2013-06-18 Diane Troutcopy_tree_from wasn't actually making any symlinks. tree | commitdiff
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. tree | commitdiff
2013-02-01 Diane TroutForgot to import an exception I used tree | commitdiff
2012-12-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkfl... tree | commitdiff
2012-12-12 Diane TroutSimplify linking fastq files to their library id. tree | commitdiff
2012-12-08 Diane TroutAdd a FastqName class to create and parse standardized... tree | commitdiff
2012-11-29 Diane TroutUse unittest2's module hooks for setting up the django... tree | commitdiff
2012-11-29 Diane TroutRemove prints that were being called in test code. tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. tree | commitdiff
2012-11-14 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-27 Diane Troutolder librdf wanted to include type information when... tree | commitdiff
2012-09-27 Diane TroutWhen collecting files for a geo submission, group on... tree | commitdiff
2012-09-25 Diane TroutThis might actually generate soft file with raw & suppl... tree | commitdiff
2012-09-24 Diane TroutMerge changing lane_number to string and sequence findi... tree | commitdiff
2012-09-20 Diane TroutMinor tweaks to deal with the older version of librdf... tree | commitdiff
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... tree | commitdiff
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-18 Diane TroutProgress using rdf model to link fastqs with flowcell... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-12 Diane TroutBe more defensive if the database is missing some data... tree | commitdiff
2012-09-12 Diane Troutfix a wrong variable name tree | commitdiff
2012-09-12 Diane TroutTweaks to make the sample gather query faster. tree | commitdiff
2012-09-10 Diane TroutUse the same model for building fastqs as for building... tree | commitdiff
2012-09-01 Diane TroutImport flowcell information into our model this allows tree | commitdiff
2012-08-31 Diane TroutOlder rdf library doesn't like unicode strings as nodes tree | commitdiff
2012-08-31 Diane TroutFix matching scanned sequence files to library IDs... tree | commitdiff
2012-08-31 Diane TroutInherit from MutableMapping for ResultMap. tree | commitdiff
2012-08-31 Diane TroutAllow option to save/restore a sequence class to a... tree | commitdiff
2012-08-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-09 Diane TroutFix some mismatches between variable names in python... tree | commitdiff
2012-08-07 Diane TroutCreate a lane to file name turtle data file tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-01 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-01 Diane TroutGEO wanted both files for a paired lane to be on a... tree | commitdiff
2012-07-24 Diane TroutGet actual list of sequencers used for a library. tree | commitdiff
2012-06-25 Diane TroutConvert dictionary comprehension to dict(generator... tree | commitdiff
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-06-14 Diane TroutImport information from NCBI SRA into a RDF model. tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-12 Diane TroutProperly constructing the geo soft file really needed... tree | commitdiff
2012-04-17 Diane TroutRename global logger to LOGGER to be more PEP8 like tree | commitdiff
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. tree | commitdiff
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... tree | commitdiff
2012-03-29 Diane TroutChange to using django templates for generating condor... tree | commitdiff
2012-03-07 Diane TroutAlways include the python path when generating the... tree | commitdiff
2012-03-07 Diane TroutAdd extract HiSeq project based split fastq files to... tree | commitdiff
2012-01-25 Diane TroutAdded scanning for libraries that aren't attached to... tree | commitdiff
2012-01-25 Diane TroutChanged pprint daf attributes to a pformat output via... tree | commitdiff
2012-01-23 Diane TroutDon't use assertIn as older ubuntu python doesn't have it tree | commitdiff
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-12-20 Diane TroutAdd in test code for testing downloading the ucsc downl... tree | commitdiff
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... tree | commitdiff
2011-11-07 Diane TroutUse Node.uri instead of manually trimming off RDF.Node... tree | commitdiff
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-11-04 Diane TroutUse a logger initialized to the module name much more... tree | commitdiff
2011-11-04 Diane TroutLorian renamed some of the libraries, change our hard... tree | commitdiff
2011-09-30 Diane TroutConfigure daf variables in only one place. (daf.py) tree | commitdiff
2011-09-30 Diane TroutAdd support for new "extraVariables" term in DAF. tree | commitdiff
2011-09-02 Diane TroutAttempt to download DAF data for a encodesubmit submission tree | commitdiff
2011-07-29 Diane TroutMake a test more robust to different versions of librdf tree | commitdiff
2011-07-28 Diane TroutExamine the DAF to determine if the DDF needs to includ... tree | commitdiff
2011-07-20 Diane TroutStop copying attributes from library to a submission... tree | commitdiff
2011-07-07 Diane TroutLibrary urls have a trailing /. make sure the test... tree | commitdiff
2011-07-07 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-30 Diane TroutOlder librdf gets cranky when mixing unicode & strings tree | commitdiff
2011-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-29 Diane TroutFurther clean up ddf generation. tree | commitdiff
2011-06-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-06-22 Diane TroutSlightly alter some tests to work with versions of... tree | commitdiff
2011-06-22 Diane TroutMove parse_flowcell_id out of frontend.samples.results tree | commitdiff
2011-06-21 Diane TroutFinish new RDF based ddf construction. tree | commitdiff
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htsworkflow sequencing LIMS software