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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git] / htsworkflow / submission /
2014-10-23 Diane Troutmark the example submission rule files as being raw... master tree | commitdiff
2014-10-23 Diane Troutmost of our test submission rule files use bz2 regexes... tree | commitdiff
2014-10-23 Diane TroutChange unittest2 back into unittest. tree | commitdiff
2014-06-10 Diane TroutAdd post_json as some DCC objects are created with... tree | commitdiff
2014-06-10 Diane TroutRename headers to json_headers for requests (seemed... tree | commitdiff
2014-06-10 Diane TroutUpdates to jsonld context for the DCC schemas. tree | commitdiff
2014-06-10 Diane TroutUpdate test_encoded test cases due to https now being... tree | commitdiff
2014-06-10 Diane TroutDCC switched to https tree | commitdiff
2014-06-10 Diane TroutUpdate fastqname code & test code to better support... tree | commitdiff
2014-06-10 Diane TroutDirectly generate compressed fastq files from HiSeq... tree | commitdiff
2014-06-10 Diane Troutthe filename templates were moved from condorfastq... tree | commitdiff
2014-06-10 Diane TroutJust use the python 2 url parsers instead of trying... tree | commitdiff
2014-01-22 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2014-01-17 Diane TroutRemove django test environment setup code. tree | commitdiff
2014-01-17 Diane TroutImplement a encoded search to json-ld wrapper. tree | commitdiff
2014-01-17 Diane Troutmake sure @vocab url has a trailing #. Its needed to... tree | commitdiff
2014-01-17 Diane TroutUse new context creation functions to attach context... tree | commitdiff
2014-01-17 Diane TroutAdd functions to create a json-ld context and add names... tree | commitdiff
2014-01-15 Diane TroutUtility class for accessing ENCODE3's submit / data... tree | commitdiff
2014-01-15 Diane Troutremove some trailing whitespace tree | commitdiff
2014-01-15 Diane Troutremove some trailing whitespace tree | commitdiff
2014-01-08 Diane TroutRename stripNamespace strip_namespace tree | commitdiff
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2013-12-17 Diane Troutremove some test code debugging print statements tree | commitdiff
2013-12-17 Diane TroutMerge branch 'django1.4' tree | commitdiff
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-12-09 Diane TroutAdd new paired library types to our hackish list for... tree | commitdiff
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... tree | commitdiff
2013-10-21 Diane TroutPass additional information to the trackhub. tree | commitdiff
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-17 Diane TroutMerge branch 'master' into django1.4 tree | commitdiff
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-10-11 Diane TroutMake it possible to set a label on a track. tree | commitdiff
2013-10-09 Diane Troutremove spurious newline tree | commitdiff
2013-09-24 Diane TroutShare more code to generate result tree. tree | commitdiff
2013-08-12 Diane TroutUpdate test data for renamed library type. tree | commitdiff
2013-08-10 Diane TroutAdd sortOrder and filtering parameters to the trackhub. tree | commitdiff
2013-07-22 Diane TroutTest changes to submission code. tree | commitdiff
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. tree | commitdiff
2013-07-22 Diane TroutAdd a generator that returns analysis nodes from a... tree | commitdiff
2013-07-18 Diane TroutAdd function to list the names for submissions from... tree | commitdiff
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. tree | commitdiff
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 tree | commitdiff
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... tree | commitdiff
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... tree | commitdiff
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... tree | commitdiff
2013-06-28 Diane TroutAdd option to copy source files for a submission. tree | commitdiff
2013-06-18 Diane TroutFurther improve reliability of make_tree_from. tree | commitdiff
2013-06-18 Diane Troutcopy_tree_from wasn't actually making any symlinks. tree | commitdiff
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. tree | commitdiff
2013-02-01 Diane TroutForgot to import an exception I used tree | commitdiff
2012-12-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkfl... tree | commitdiff
2012-12-12 Diane TroutSimplify linking fastq files to their library id. tree | commitdiff
2012-12-08 Diane TroutAdd a FastqName class to create and parse standardized... tree | commitdiff
2012-11-29 Diane TroutUse unittest2's module hooks for setting up the django... tree | commitdiff
2012-11-29 Diane TroutRemove prints that were being called in test code. tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-28 Diane TroutConvert to unittest2 tree | commitdiff
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. tree | commitdiff
2012-11-14 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-27 Diane Troutolder librdf wanted to include type information when... tree | commitdiff
2012-09-27 Diane TroutWhen collecting files for a geo submission, group on... tree | commitdiff
2012-09-25 Diane TroutThis might actually generate soft file with raw & suppl... tree | commitdiff
2012-09-24 Diane TroutMerge changing lane_number to string and sequence findi... tree | commitdiff
2012-09-20 Diane TroutMinor tweaks to deal with the older version of librdf... tree | commitdiff
2012-09-19 Diane TroutUse htsworkflow ontology to validate various RDF using... tree | commitdiff
2012-09-18 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-18 Diane TroutProgress using rdf model to link fastqs with flowcell... tree | commitdiff
2012-09-18 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-09-12 Diane TroutBe more defensive if the database is missing some data... tree | commitdiff
2012-09-12 Diane Troutfix a wrong variable name tree | commitdiff
2012-09-12 Diane TroutTweaks to make the sample gather query faster. tree | commitdiff
2012-09-10 Diane TroutUse the same model for building fastqs as for building... tree | commitdiff
2012-09-01 Diane TroutImport flowcell information into our model this allows tree | commitdiff
2012-08-31 Diane TroutOlder rdf library doesn't like unicode strings as nodes tree | commitdiff
2012-08-31 Diane TroutFix matching scanned sequence files to library IDs... tree | commitdiff
2012-08-31 Diane TroutInherit from MutableMapping for ResultMap. tree | commitdiff
2012-08-31 Diane TroutAllow option to save/restore a sequence class to a... tree | commitdiff
2012-08-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-09 Diane TroutFix some mismatches between variable names in python... tree | commitdiff
2012-08-07 Diane TroutCreate a lane to file name turtle data file tree | commitdiff
2012-08-06 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-01 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-08-01 Diane TroutGEO wanted both files for a paired lane to be on a... tree | commitdiff
2012-07-24 Diane TroutGet actual list of sequencers used for a library. tree | commitdiff
2012-06-25 Diane TroutConvert dictionary comprehension to dict(generator... tree | commitdiff
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-06-14 Diane TroutImport information from NCBI SRA into a RDF model. tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-12 Diane TroutProperly constructing the geo soft file really needed... tree | commitdiff
2012-04-17 Diane TroutRename global logger to LOGGER to be more PEP8 like tree | commitdiff
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. tree | commitdiff
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... tree | commitdiff
2012-03-29 Diane TroutChange to using django templates for generating condor... tree | commitdiff
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htsworkflow sequencing LIMS software