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Rename headers to json_headers for requests (seemed a bit clearer)
[htsworkflow.git]
/
htsworkflow
/
submission
/
2014-06-10
Diane Trout
Rename headers to json_headers for requests (seemed...
tree
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commitdiff
2014-06-10
Diane Trout
Updates to jsonld context for the DCC schemas.
tree
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commitdiff
2014-06-10
Diane Trout
Update test_encoded test cases due to https now being...
tree
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commitdiff
2014-06-10
Diane Trout
DCC switched to https
tree
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commitdiff
2014-06-10
Diane Trout
Update fastqname code & test code to better support...
tree
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commitdiff
2014-06-10
Diane Trout
Directly generate compressed fastq files from HiSeq...
tree
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commitdiff
2014-06-10
Diane Trout
the filename templates were moved from condorfastq...
tree
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commitdiff
2014-06-10
Diane Trout
Just use the python 2 url parsers instead of trying...
tree
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commitdiff
2014-01-22
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-01-17
Diane Trout
Remove django test environment setup code.
tree
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commitdiff
2014-01-17
Diane Trout
Implement a encoded search to json-ld wrapper.
tree
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commitdiff
2014-01-17
Diane Trout
make sure @vocab url has a trailing #. Its needed to...
tree
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commitdiff
2014-01-17
Diane Trout
Use new context creation functions to attach context...
tree
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commitdiff
2014-01-17
Diane Trout
Add functions to create a json-ld context and add names...
tree
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commitdiff
2014-01-15
Diane Trout
Utility class for accessing ENCODE3's submit / data...
tree
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commitdiff
2014-01-15
Diane Trout
remove some trailing whitespace
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commitdiff
2014-01-15
Diane Trout
remove some trailing whitespace
tree
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commitdiff
2014-01-08
Diane Trout
Rename stripNamespace strip_namespace
tree
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commitdiff
2013-12-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2013-12-17
Diane Trout
remove some test code debugging print statements
tree
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commitdiff
2013-12-17
Diane Trout
Merge branch 'django1.4'
tree
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commitdiff
2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-09
Diane Trout
Add new paired library types to our hackish list for...
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commitdiff
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-21
Diane Trout
Merge remote-tracking branch 'brisby/django1.4' into...
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commitdiff
2013-10-21
Diane Trout
Pass additional information to the trackhub.
tree
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commitdiff
2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'master' into django1.4
tree
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commitdiff
2013-10-17
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-10-11
Diane Trout
Make it possible to set a label on a track.
tree
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commitdiff
2013-10-09
Diane Trout
remove spurious newline
tree
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commitdiff
2013-09-24
Diane Trout
Share more code to generate result tree.
tree
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commitdiff
2013-08-12
Diane Trout
Update test data for renamed library type.
tree
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commitdiff
2013-08-10
Diane Trout
Add sortOrder and filtering parameters to the trackhub.
tree
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commitdiff
2013-07-22
Diane Trout
Test changes to submission code.
tree
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commitdiff
2013-07-22
Diane Trout
Generate manifest.txt files for submitting to ENCODE3.
tree
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commitdiff
2013-07-22
Diane Trout
Add a generator that returns analysis nodes from a...
tree
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commitdiff
2013-07-18
Diane Trout
Add function to list the names for submissions from...
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commitdiff
2013-07-08
Diane Trout
Update test to work with species -> species_name rename.
tree
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commitdiff
2013-07-03
Diane Trout
Generate manifest files for ENCODE3
tree
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commitdiff
2013-07-01
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-07-01
Diane Trout
Add the option to copy tree in addition to making a...
tree
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commitdiff
2013-07-01
Diane Trout
Initial attempt to start generating trackHubs and manif...
tree
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commitdiff
2013-06-28
Diane Trout
Add option to copy source files for a submission.
tree
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commitdiff
2013-06-18
Diane Trout
Further improve reliability of make_tree_from.
tree
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commitdiff
2013-06-18
Diane Trout
copy_tree_from wasn't actually making any symlinks.
tree
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commitdiff
2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
tree
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commitdiff
2013-02-01
Diane Trout
Forgot to import an exception I used
tree
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commitdiff
2012-12-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkfl...
tree
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commitdiff
2012-12-12
Diane Trout
Simplify linking fastq files to their library id.
tree
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commitdiff
2012-12-08
Diane Trout
Add a FastqName class to create and parse standardized...
tree
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commitdiff
2012-11-29
Diane Trout
Use unittest2's module hooks for setting up the django...
tree
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commitdiff
2012-11-29
Diane Trout
Remove prints that were being called in test code.
tree
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
tree
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commitdiff
2012-11-20
Diane Trout
Fix RDF schema problems with lane_number and species.
tree
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commitdiff
2012-11-14
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-27
Diane Trout
older librdf wanted to include type information when...
tree
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commitdiff
2012-09-27
Diane Trout
When collecting files for a geo submission, group on...
tree
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commitdiff
2012-09-25
Diane Trout
This might actually generate soft file with raw & suppl...
tree
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commitdiff
2012-09-24
Diane Trout
Merge changing lane_number to string and sequence findi...
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commitdiff
2012-09-20
Diane Trout
Minor tweaks to deal with the older version of librdf...
tree
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commitdiff
2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
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commitdiff
2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-18
Diane Trout
Progress using rdf model to link fastqs with flowcell...
tree
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-12
Diane Trout
Be more defensive if the database is missing some data...
tree
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commitdiff
2012-09-12
Diane Trout
fix a wrong variable name
tree
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commitdiff
2012-09-12
Diane Trout
Tweaks to make the sample gather query faster.
tree
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commitdiff
2012-09-10
Diane Trout
Use the same model for building fastqs as for building...
tree
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commitdiff
2012-09-01
Diane Trout
Import flowcell information into our model this allows
tree
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commitdiff
2012-08-31
Diane Trout
Older rdf library doesn't like unicode strings as nodes
tree
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commitdiff
2012-08-31
Diane Trout
Fix matching scanned sequence files to library IDs...
tree
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commitdiff
2012-08-31
Diane Trout
Inherit from MutableMapping for ResultMap.
tree
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commitdiff
2012-08-31
Diane Trout
Allow option to save/restore a sequence class to a...
tree
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commitdiff
2012-08-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-09
Diane Trout
Fix some mismatches between variable names in python...
tree
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commitdiff
2012-08-07
Diane Trout
Create a lane to file name turtle data file
tree
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
GEO wanted both files for a paired lane to be on a...
tree
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commitdiff
2012-07-24
Diane Trout
Get actual list of sequencers used for a library.
tree
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commitdiff
2012-06-25
Diane Trout
Convert dictionary comprehension to dict(generator...
tree
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commitdiff
2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-06-14
Diane Trout
Import information from NCBI SRA into a RDF model.
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
tree
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commitdiff
2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-05-12
Diane Trout
Properly constructing the geo soft file really needed...
tree
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commitdiff
2012-04-17
Diane Trout
Rename global logger to LOGGER to be more PEP8 like
tree
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commitdiff
2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-04-11
Diane Trout
Start developing GEO SOFT submission tool.
tree
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commitdiff
2012-04-11
Diane Trout
Move code out of ucsc_gather and into the htsworkflow...
tree
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commitdiff
2012-03-29
Diane Trout
Change to using django templates for generating condor...
tree
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commitdiff
2012-03-07
Diane Trout
Always include the python path when generating the...
tree
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commitdiff
2012-03-07
Diane Trout
Add extract HiSeq project based split fastq files to...
tree
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commitdiff
2012-01-25
Diane Trout
Added scanning for libraries that aren't attached to...
tree
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commitdiff
2012-01-25
Diane Trout
Changed pprint daf attributes to a pformat output via...
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