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Changed pprint daf attributes to a pformat output via logging.debug
[htsworkflow.git]
/
htsworkflow
/
2012-01-25
Diane Trout
Changed pprint daf attributes to a pformat output via...
tree
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commitdiff
2012-01-23
Diane Trout
Don't use assertIn as older ubuntu python doesn't have it
tree
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commitdiff
2012-01-23
Diane Trout
Invalid library IDs should 404, not return a useless...
tree
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commitdiff
2011-12-20
Diane Trout
Handle dateTime timestamps in RDF.Nodes
tree
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commitdiff
2011-12-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-12-20
Diane Trout
whitespace reformatting
tree
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commitdiff
2011-12-20
Diane Trout
Remove eXecute bit from modules
tree
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commitdiff
2011-12-20
Diane Trout
Add in test code for testing downloading the ucsc downl...
tree
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commitdiff
2011-12-20
Diane Trout
Try to figure out where UCSC is hosting our submitted...
tree
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commitdiff
2011-11-22
Diane Trout
Add a method to override command used to convert srf...
tree
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commitdiff
2011-11-07
Diane Trout
Use Node.uri instead of manually trimming off RDF.Node...
tree
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commitdiff
2011-11-07
Diane Trout
Function generating index text was assuming there'd...
tree
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commitdiff
2011-11-07
Diane Trout
Update library adapter type initial data to match lorie...
tree
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commitdiff
2011-11-07
Diane Trout
Merge in removal of queuecommand sleep.
tree
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commitdiff
2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
tree
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commitdiff
2011-11-04
Diane Trout
Lorian renamed some of the libraries, change our hard...
tree
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commitdiff
2011-10-21
Diane Trout
Yes generate regular gerald config file.
tree
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commitdiff
2011-10-18
Diane Trout
Add library adapter type to filter choices,
tree
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commitdiff
2011-10-13
Diane Trout
Allow replicates 5 & 6
tree
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commitdiff
2011-10-11
Diane Trout
Use "not run" instead of todo to describe libraries...
tree
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commitdiff
2011-10-11
Diane Trout
Add a todo view that shows only libraries that have no
tree
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commitdiff
2011-10-10
Diane Trout
Remove ReadPrep and Thumbnail_Images being generated...
tree
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commitdiff
2011-10-10
Diane Trout
Don't need to duplicate %t tile in srf command
tree
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commitdiff
2011-10-06
Diane Trout
Add the ability to specify a flowcell id instead of...
tree
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commitdiff
2011-10-04
Diane Trout
Add support for flowcells analyzed with Casava 1.7
tree
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commitdiff
2011-09-30
Diane Trout
Configure daf variables in only one place. (daf.py)
tree
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commitdiff
2011-09-30
Diane Trout
Add support for new "extraVariables" term in DAF.
tree
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commitdiff
2011-09-22
Diane Trout
Mark library & flowcell as a type in RDF.
tree
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commitdiff
2011-09-21
Diane Trout
Switch from beautifulsoup to lxml, now that I know...
tree
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commitdiff
2011-09-19
Diane Trout
Output samples that don't have index sequence as well.
tree
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commitdiff
2011-09-19
Diane Trout
Python 2.6's DictWriter doesn't have writeheader, so...
tree
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commitdiff
2011-09-17
Diane Trout
Disable csrf protection for the json urls
tree
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commitdiff
2011-09-17
Diane Trout
Add support for tracking the multiplex index sequence.
0.5.4
tree
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commitdiff
2011-09-12
Diane Trout
Add support for first-gen HiSeq flowcells (e.g. ABXX)
tree
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commitdiff
2011-09-08
Diane Trout
Django 1.1's csrf protection appears to be handled...
0.5.3
tree
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commitdiff
2011-09-08
Diane Trout
Add links to the admin page on the public pages if...
tree
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commitdiff
2011-09-08
Diane Trout
Make it so the login link redirects you back to the...
tree
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commitdiff
2011-09-08
Diane Trout
Emacs stripped off trailing whitespace
tree
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commitdiff
2011-09-07
Diane Trout
Add link to admin page to flowcell & library pages...
tree
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commitdiff
2011-09-07
Diane Trout
Remove margin-right command as it was making a giant...
tree
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commitdiff
2011-09-02
Diane Trout
Attempt to download DAF data for a encodesubmit submission
tree
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commitdiff
2011-08-31
Diane Trout
Enable csrf proection when running under Django 1.2
tree
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commitdiff
2011-08-18
Diane Trout
Rescan a flowcell data run once per (setting.RESCAN_DEL...
tree
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commitdiff
2011-08-08
Diane Trout
Deal with (failed) in flowcell names.
tree
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commitdiff
2011-08-04
Diane Trout
Add a way to browse the list of entered antibody/antigene
tree
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commitdiff
2011-07-29
Diane Trout
Make a test more robust to different versions of librdf
tree
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commitdiff
2011-07-29
Diane Trout
Construct unit tests for inventory/hard disk long term...
tree
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commitdiff
2011-07-28
Brandon W. King
An improvement on the inventory system. Getting it...
tree
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commitdiff
2011-07-28
Diane Trout
Examine the DAF to determine if the DDF needs to includ...
tree
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commitdiff
2011-07-20
Diane Trout
Stop copying attributes from library to a submission...
tree
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commitdiff
2011-07-20
Diane Trout
Remove spurious debugging print statement
tree
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commitdiff
2011-07-13
Diane Trout
Make antibody catalog number optional for creating...
0.5.2
tree
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commitdiff
2011-07-13
Diane Trout
Make sure we can roundtrip unicode characters via conve...
tree
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commitdiff
2011-07-09
Diane Trout
Add "Count of multi-reads" back into the library page
tree
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commitdiff
2011-07-07
Diane Trout
Don't use xsd:string for string data types in toTypedNode
tree
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commitdiff
2011-07-07
Diane Trout
Library urls have a trailing /. make sure the test...
tree
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commitdiff
2011-07-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-07-06
Diane Trout
Add some additional logging to util/rdflib.py to help...
tree
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commitdiff
2011-07-01
Diane Trout
Make sure that the lane set is sorted on the flowcell...
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-30
Diane Trout
Older librdf gets cranky when mixing unicode & strings
tree
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commitdiff
2011-06-30
Diane Trout
Django 1.1 doesn't support validators so remove it...
tree
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commitdiff
2011-06-30
Diane Trout
Fix typo in a template
tree
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commitdiff
2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-29
Diane Trout
Further clean up ddf generation.
tree
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commitdiff
2011-06-28
Diane Trout
Start supporting multiple libraries per lane, as needed...
tree
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commitdiff
2011-06-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-22
Diane Trout
Slightly alter some tests to work with versions of...
tree
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commitdiff
2011-06-22
Diane Trout
Move parse_flowcell_id out of frontend.samples.results
tree
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commitdiff
2011-06-21
Diane Trout
Finish new RDF based ddf construction.
tree
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commitdiff
2011-06-18
Diane Trout
Rework ucsc gather to use RDF models for gathering...
tree
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commitdiff
2011-06-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-18
Diane Trout
Include the library_id in addition to the RDFa library uri
tree
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commitdiff
2011-06-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-17
Diane Trout
Minor RDFa fixes.
tree
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commitdiff
2011-06-15
Diane Trout
Start to move all the RDF namespace definitions into...
tree
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commitdiff
2011-06-15
Diane Trout
Add module to parse UCSC DAF file.
tree
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commitdiff
2011-06-15
Diane Trout
Move code to make srf and qseq to fastq condor scripts...
tree
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commitdiff
2011-06-15
Diane Trout
Sample Test RDFA needed the flowcell id field
tree
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commitdiff
2011-06-15
Diane Trout
Remove some uneeded linefeeds
tree
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commitdiff
2011-06-14
Diane Trout
Fix a template typo
tree
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commitdiff
2011-06-13
Diane Trout
Supprose IVC plot table rows if we don't have data...
tree
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commitdiff
2011-06-13
Diane Trout
Follow the flowcell link from the library page.
tree
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commitdiff
2011-06-13
Diane Trout
The get_permanent_link function on the flowcell model...
tree
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commitdiff
2011-06-13
Diane Trout
Remove some now unnecessary coments and reformat some...
tree
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commitdiff
2011-06-11
Diane Trout
python's 2.6 uuid function doesn't cast to a string...
tree
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commitdiff
2011-06-11
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-06-11
Diane Trout
Convert Rami's DataRun feature to something useful...
tree
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commitdiff
2011-06-10
Brandon W. King
The srf/qseq --raw-format patch.
tree
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commitdiff
2011-06-09
Diane Trout
Move test srf files to testdata directory so I can...
tree
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commitdiff
2011-06-09
Diane Trout
Add a method to return the runfolder name.
tree
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commitdiff
2011-05-27
Diane Trout
Add in test code to verify RDF data being added to...
tree
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commitdiff
2011-05-27
Diane Trout
Trivial change, add human to common name of "homo sapiens"
tree
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commitdiff
2011-05-26
Lorian Schaeffer
Add feature to manage and print labels.
tree
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commitdiff
2011-05-26
Diane Trout
Merge branch 'add-condition'
tree
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commitdiff
2011-05-25
Diane Trout
Make antibody & condition visible.
add-condition
tree
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commitdiff
2011-05-16
Diane Trout
Pretty print the json files to help debugging
tree
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commitdiff
2011-05-16
Diane Trout
Allow configuring additional database settings so we...
tree
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commitdiff
2011-05-09
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
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