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Keep moving settings around until I can find a place that tests on multiple machines
[htsworkflow.git]
/
htsworkflow
/
2011-05-09
Diane Trout
Keep moving settings around until I can find a place...
tree
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commitdiff
2011-05-09
Diane Trout
Report missing directory names to help diagnose sequenc...
tree
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commitdiff
2011-05-09
Diane Trout
Validate fastq files in both phred33 & phred64 versions
tree
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commitdiff
2011-04-18
Diane Trout
Be more flexible with fastq filenames.
tree
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commitdiff
2011-04-06
Diane Trout
django-nose didn't work with django 1.1, so I went...
tree
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commitdiff
2011-04-05
Diane Trout
Adjust django driver script to test the whole package.
tree
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commitdiff
2011-04-05
Diane Trout
Revert a bad change. Apparently past me knew what I...
tree
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commitdiff
2011-04-05
Diane Trout
remove spurious debugging print
tree
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commitdiff
2011-04-02
Diane Trout
Remove spurious debug print statements
tree
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commitdiff
2011-04-02
Diane Trout
Fix a typo inserted into the template.
tree
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commitdiff
2011-04-02
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-04-02
Diane Trout
Add pages to show information about a particular flowcell.
tree
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commitdiff
2011-03-09
Diane Trout
Update spoolwatcher to 0.2 benderjab's logging api
tree
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commitdiff
2011-03-07
Diane Trout
Move some common runfolder path management code into...
tree
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commitdiff
2011-03-07
Diane Trout
Add a place for "breadcrumbs" back into the base.html...
tree
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commitdiff
2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-02-17
Diane Trout
Major updateds to encode_find for extracting encode...
tree
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commitdiff
2011-02-17
Diane Trout
Only use one name for dates on the page.
tree
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commitdiff
2011-02-17
Diane Trout
Minor RDFa cleanups
tree
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commitdiff
2011-02-17
Diane Trout
Change default font size to 14pt
tree
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commitdiff
2011-02-17
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-02-17
Diane Trout
Add RDFa data to our library pages.
tree
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commitdiff
2011-02-17
Diane Trout
Add a small comment defining "results_dir"
tree
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commitdiff
2011-02-15
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-02-07
Diane Trout
Add in a little bit of qseq2fastq testing code. More...
tree
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commitdiff
2011-02-07
Diane Trout
Add documentation about which Phred format we're generating
tree
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commitdiff
2011-02-03
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-02-03
Diane Trout
First cycle can be 2 digit.
tree
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commitdiff
2011-01-25
Diane Trout
Fix typo in a function name.
tree
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commitdiff
2011-01-25
Diane Trout
Add in 12x / 18x PCR protocol end points from Lorian
tree
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commitdiff
2011-01-25
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-01-25
root
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2011-01-21
Diane Trout
Merge branch 'master' of gitosis@mus.cacr.caltech.edu...
tree
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commitdiff
2011-01-14
root
Make replicate field visable on the public page.
tree
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commitdiff
2011-01-08
Diane Trout
Add validation script
0.5.0
tree
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commitdiff
2010-12-02
Diane Trout
Make the inventory login page look a bit nicer.
tree
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commitdiff
2010-12-02
Diane Trout
Adjust some whitespace
tree
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commitdiff
2010-12-01
Diane Trout
This mildly adjusts the css to be a bit prettier
tree
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commitdiff
2010-12-01
Diane Trout
Add a new ini-file option to point to the flowcell...
tree
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commitdiff
2010-11-30
Diane Trout
Add config option notification_bcc for always attaching...
tree
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commitdiff
2010-11-07
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2010-11-07
Diane Trout
Very basic non-ExtJS version of the inventory page
tree
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commitdiff
2010-11-07
Diane Trout
Remove another ExtJS panel reference.
tree
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commitdiff
2010-11-01
Diane Trout
Only complane about missing genomes if we _wanted_...
tree
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commitdiff
2010-11-01
Diane Trout
Check for s_${lane}_02_matrix.txt as well as s_${lane...
tree
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commitdiff
2010-10-28
Diane Trout
Remove dependency on ExtJS for library & lanes_for...
tree
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commitdiff
2010-10-27
Diane Trout
The WITH_SEQUENCE flag needs to be lower-case "true".
tree
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commitdiff
2010-10-22
Diane Trout
Report version number derived from git tag.
tree
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commitdiff
2010-10-19
Diane Trout
Set WITH_SEQUENCE as both a per-lane AND global parameter
0.4.5
tree
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commitdiff
2010-10-08
Diane Trout
WITH_SEQUENCE is actually a global GERALD option, remov...
tree
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commitdiff
2010-10-07
Diane Trout
Update gerald config file generation.
tree
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commitdiff
2010-10-05
Lorian Schaeffer
Minor changes to display
tree
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commitdiff
2010-10-01
Lorian Schaeffer
Removed some models from the admin index view
tree
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commitdiff
2010-10-01
Lorian Schaeffer
Changed Frequently Used links to be properly relative
tree
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commitdiff
2010-10-01
Lorian Schaeffer
Removed from admin index page
tree
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commitdiff
2010-10-01
Lorian Schaeffer
Removed unused DataRun model from admin index page
tree
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commitdiff
2010-10-01
Lorian Schaeffer
Removed all analysis models from main admin index
tree
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commitdiff
2010-10-01
Lorian Schaeffer
Limited which models show up on admin index page
tree
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commitdiff
2010-09-24
Diane Trout
Adjust spoolwatchers use of inotify to correspond to...
tree
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commitdiff
2010-09-24
Diane Trout
Handle the case when a sequencing lane lacks any yield...
tree
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commitdiff
2010-09-10
Diane Trout
Add support for CASAVA 1.7
tree
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commitdiff
2010-08-23
Diane Trout
Add a "All Lanes" option to the control-lane field...
tree
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commitdiff
2010-08-14
Diane Trout
Shrink flowcell notes field.
tree
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commitdiff
2010-08-13
Diane Trout
Remove debug print statement
tree
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commitdiff
2010-08-13
Diane Trout
Reduce the size of the bioanalyzer summary text box
tree
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commitdiff
2010-08-13
Diane Trout
This patch adds in fields to support storing bioanalyze...
tree
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commitdiff
2010-07-14
Diane Trout
Add search field to the lanes admin page
tree
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commitdiff
2010-07-12
Diane Trout
Under some conditions urlerror doesn't have a code,
tree
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commitdiff
2010-07-12
Diane Trout
Report if a lane was on a paired end flowcell from...
tree
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commitdiff
2010-07-07
Diane Trout
This still isn't ideal as the RESULTS_HOME_DIR is still...
tree
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commitdiff
2010-06-15
Diane Trout
Update the 'flowcell started' email message to include...
tree
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commitdiff
2010-06-14
Diane Trout
Rename avg_lib_size to gel_cut_size, and add insert_size
tree
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commitdiff
2010-06-14
Diane Trout
Update internal copy of the django admin/templates...
tree
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commitdiff
2010-06-10
Diane Trout
Extend htsworkflow.pipelines.sequences to also try...
tree
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commitdiff
2010-06-10
Diane Trout
Move the code to scan the sequence file archive to...
tree
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commitdiff
2010-06-10
Diane Trout
new api module actually needed logging.
tree
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commitdiff
2010-06-10
Diane Trout
Move the knowledge of the urls for the REST API to...
tree
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commitdiff
2010-05-29
Diane Trout
Add in extra fields lorian asked for to library detail...
tree
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commitdiff
2010-05-14
Brandon King
A patch that allows printing more than 11 labels at...
tree
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commitdiff
2010-05-13
Brandon King
Default to pointing to the Ubuntu python location for...
tree
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commitdiff
2010-05-08
Diane Trout
Matches can have trailing AGCT in addition to a number
tree
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commitdiff
2010-05-07
Brandon King
Disabling 'delete selected'.
tree
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commitdiff
2010-04-29
Brandon King
Added a 'Print Labels' action to the Library Admin...
tree
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commitdiff
2010-04-23
Diane Trout
Update summary script to read from the GERALD Summary...
tree
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commitdiff
2010-04-10
Brandon King
WARNING: Django 1.0.2 to Django 1.1.1 compatibility...
tree
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commitdiff
2010-03-05
Diane Trout
Report hidden field in the library API
tree
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commitdiff
2010-03-05
Diane Trout
Use the HTS workflow API to figure out the library...
tree
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commitdiff
2010-02-22
Diane Trout
there is no such thing as sequence_extended. I was...
tree
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commitdiff
2010-02-04
Diane Trout
Return affiliation, library name, and comment in the...
tree
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commitdiff
2010-01-30
Diane Trout
Update the inventory tracker code for the split from...
tree
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commitdiff
2010-01-28
Diane Trout
Adds a json api 'lanes_for' feature
tree
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commitdiff
2010-01-28
Diane Trout
Force auth_backend error messages to sys stderr, as
tree
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commitdiff
2010-01-27
Diane Trout
Remove debugging code that breaks mod_wsgi
tree
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commitdiff
2010-01-26
Diane Trout
Added 'lanes_for' which will show recent flowcell lanes...
tree
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commitdiff
2010-01-22
Diane Trout
Refine user handling.
tree
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commitdiff
2010-01-21
Diane Trout
Update test code to deal with the switch to storing...
tree
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commitdiff
2010-01-21
Diane Trout
Don't throw an error if library.cell_line is None.
tree
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commitdiff
2009-12-15
Diane Trout
Add flowcell/lane information for a library to the...
tree
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commitdiff
2009-12-15
Diane Trout
Define the unicode() function for HTSUser to also repor...
tree
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commitdiff
2009-12-15
Diane Trout
Include information about the flowcell run date on...
tree
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commitdiff
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