| 2015-11-30 |
Diane Trout | make a more informative log message |
tree | commitdiff |
| 2015-11-30 |
Diane Trout | Read the first sequence out of the fastq to find the... |
tree | commitdiff |
| 2015-11-30 |
Diane Trout | refactor encode3 spreadsheet based object creation... |
tree | commitdiff |
| 2015-10-27 |
Diane Trout | update dotted path for python3 |
tree | commitdiff |
| 2015-10-27 |
Diane Trout | update url to new standard url |
tree | commitdiff |
| 2015-10-27 |
Diane Trout | Update schema tests for upstreams release 33 |
tree | commitdiff |
| 2015-10-27 |
Diane Trout | make exception dotted name python3 compliant |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | this works better with python 3... |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | apparently json.dump can write to a stream |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | Add mode to connect to the DCC and make sure the files... |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | add knowledge about file links |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | updates to deal with encoded 33 path changes |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor... |
tree | commitdiff |
| 2015-10-20 |
Diane Trout | move run_aws_cp command out of class to make it easier... |
tree | commitdiff |
| 2015-09-24 |
Diane Trout | Return read_length for file properties |
tree | commitdiff |
| 2015-09-23 |
Diane Trout | Use a re.split so we can accept both ', ' and ',' betwe... |
tree | commitdiff |
| 2015-09-08 |
Diane Trout | indicate we want text not bytes |
tree | commitdiff |
| 2015-09-08 |
Diane Trout | covert to using python3 config.get fallback= |
tree | commitdiff |
| 2015-07-20 |
Diane Trout | python3 byte vs str compatibility for constructing... |
tree | commitdiff |
| 2015-05-21 |
Diane Trout | Add AccessionAgency and LibraryAccession |
tree | commitdiff |
| 2015-05-12 |
Diane Trout | remove unused import |
tree | commitdiff |
| 2015-05-12 |
Diane Trout | move experiment templates into the experiments app |
tree | commitdiff |
| 2015-05-05 |
Diane Trout | simplify library report |
tree | commitdiff |
| 2015-05-05 |
Diane Trout | Move lanes_for from samples to experiments |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | Oops I had a test function name collision. Rename one... |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | Drop support for simplejson |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | Update test to be more robust to changing dictionary... |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | fix a white space issue |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | convert non-unit-tested module to use newer raise Excep... |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | convert several not covered by unit-test modules to... |
tree | commitdiff |
| 2015-04-06 |
Diane Trout | Be more careful looking up keys when the fastqname... |
tree | commitdiff |
| 2015-03-31 |
Diane Trout | add post_spreadsheet to create encoded objects from... |
tree | commitdiff |
| 2015-03-31 |
Diane Trout | also validate documents before creating them |
tree | commitdiff |
| 2015-03-31 |
Diane Trout | actually complain if we get the wrong type |
tree | commitdiff |
| 2015-03-31 |
Diane Trout | add a docstring to validate |
tree | commitdiff |
| 2015-03-31 |
Diane Trout | Add get_accession_name to use collection name to find... |
tree | commitdiff |
| 2015-03-31 |
Diane Trout | support trying to figure out object type based on what... |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor... |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | Switch encode3 submitter to use aws. |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | Import flowcell details into the triple store from... |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | store flowcell name in the triple store if its known |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | record file size information for a file in the triple... |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | getitem should only return the key |
tree | commitdiff |
| 2015-03-27 |
Diane Trout | clean up a bit of whitespace |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | configure using a local postgres install |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Convert reads to an integer, if if it was a float in... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Actually comare an integer (length of list) to an integ... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Drop library id encoding |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use regex to make sure scripts end with the right command |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use six.moves to find urlencode and urlopen |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | filter out None c.times in list of potential times |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | use relative import for submission_test_common |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Try to detect if an object is a file type on python... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | replace xrange with enumerate |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use ''.splitlines() instead of split('\n') |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | adapt to python2 returning lists and python3 iterators |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | use sorted on the iterator instead of an in-place sort |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use max on the iterator to find the last key |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | add more from __future__ import print_function, unicode... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Call print(msg) instead of print msg |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | special case unicode handling that differs between... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Replace some unicode() with str() |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Use isinstance(object, (types)) pattern instead of... |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | Specify text vs binary mode for opening files. |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | prefer native string types. |
tree | commitdiff |
| 2015-03-20 |
Diane Trout | update more raise exceptions to Exception(message)... |
tree | commitdiff |
| 2015-03-19 |
Diane Trout | Use django.utils.encode smart_text or smart_str for... |
tree | commitdiff |
| 2015-03-18 |
Diane Trout | import ConfigParser classes from six.moves.configparser |
tree | commitdiff |
| 2015-02-03 |
Diane Trout | convert to unicode_literals |
tree | commitdiff |
| 2015-02-02 |
Diane Trout | take advantage of absolute_import to simplify import... |
tree | commitdiff |
| 2015-02-02 |
Diane Trout | base64.encodestring needs a bytearray in python3 |
tree | commitdiff |
| 2015-02-02 |
Diane Trout | Replace elif list() > int() with else |
tree | commitdiff |
| 2015-01-30 |
Diane Trout | properly call usrlib.parse instead of urlparse |
tree | commitdiff |
| 2015-01-30 |
Diane Trout | Convert alphanum sort from comparitor to key operator |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | update srf2fastq detection code to work with byte arrays |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | assume we are writing text with gzip |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | replace iterkeys with python 3 equivalents |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert has_key to X in dictionary |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | use six.moves to work around urllib / urllib2 / urlpars... |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove unicode_literals from things going to redland RDF |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove some commented out code |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert some print statements to logger messages |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert to print_function, and start adding unicode_lit... |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove ,'s from more except blocks, and now a raise too |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | more use six.moves to import StringIO |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | use six.moves to get to python3-style urllib |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | whitespace-cleanup |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | remove some commented out code |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | convert to print_function |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | use six to work around rename of configparser |
tree | commitdiff |
| 2015-01-29 |
Diane Trout | Convert old style except blocks to except Exception... |
tree | commitdiff |
| 2015-01-28 |
Diane Trout | make the search tool more flexible |
tree | commitdiff |
| 2015-01-21 |
Diane Trout | Update test_retrieve_config to work with factories |
tree | commitdiff |
| 2015-01-14 |
Diane Trout | fix spelling error in module name |
tree | commitdiff |
| 2015-01-13 |
Diane Trout | Don't pass null authentication information to ENCODED. |
tree | commitdiff |
| 2015-01-13 |
Diane Trout | use absolute_import and print_function |
tree | commitdiff |
| 2015-01-10 |
Diane Trout | get_schema_url only works on object types now, so chang... |
tree | commitdiff |
| 2015-01-10 |
Diane Trout | at some point I added code that used base64, hashlib... |
tree | commitdiff |
| 2014-12-13 |
Diane Trout | Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor... |
tree | commitdiff |
| 2014-12-13 |
Diane Trout | Add document registration class. |
tree | commitdiff |
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