projects
/
htsworkflow.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
delete jsonld helpers, as rdflib has its own jsonld plugin
[htsworkflow.git]
/
htsworkflow
/
2017-03-09
Diane Trout
delete jsonld helpers, as rdflib has its own jsonld...
tree
|
commitdiff
2017-03-09
Diane Trout
port condorfastq to rdflib
tree
|
commitdiff
2017-03-09
Diane Trout
Port daf to rdflib
tree
|
commitdiff
2017-03-09
Diane Trout
Port submission.py to rdflib
tree
|
commitdiff
2017-03-08
Diane Trout
Make compatbile with rdflib and python 2/3
tree
|
commitdiff
2017-03-08
Diane Trout
Bind the right XML namespace variable in our header
tree
|
commitdiff
2017-02-28
Diane Trout
Port pipelines.sequences to rdflib
tree
|
commitdiff
2017-02-28
Diane Trout
Port rdfinfer to rdflib (fixing a hidden bug)
tree
|
commitdiff
2017-02-28
Diane Trout
Port rdfhelp to rdflib from redland librdf.
tree
|
commitdiff
2017-02-28
Diane Trout
our pages are xhtml, so customize replace the django...
tree
|
commitdiff
2017-02-18
Diane Trout
DCC tightned up their validator
tree
|
commitdiff
2017-02-18
Diane Trout
Add new paths for spreadsheet ENCODE submission.
tree
|
commitdiff
2017-01-11
Diane Trout
Update flowcell chage_form override
tree
|
commitdiff
2017-01-11
Diane Trout
Update referring to admin changelink static icons
tree
|
commitdiff
2017-01-11
Diane Trout
dev laptop has a new hostname
tree
|
commitdiff
2016-09-15
Diane Trout
Report no data found when collections empty
tree
|
commitdiff
2016-07-25
Diane Trout
The DCC has complained about me making a few common...
tree
|
commitdiff
2016-07-25
Diane Trout
some date cells contain two dates, which is treated...
tree
|
commitdiff
2016-06-24
Diane Trout
Try providing new django apps-style configuration
tree
|
commitdiff
2016-06-24
Diane Trout
Query_set was renamed to queryset
tree
|
commitdiff
2016-06-24
Diane Trout
Match what generate_sample_results_tree creates
tree
|
commitdiff
2016-06-24
Diane Trout
Use find_statements instead of SPARQL for a query
tree
|
commitdiff
2016-06-24
Diane Trout
Remove unused variables
tree
|
commitdiff
2016-06-24
Diane Trout
Use named url pattern instead of package name
tree
|
commitdiff
2016-06-24
Diane Trout
Name all of the view that we need to reverse
tree
|
commitdiff
2016-06-24
Diane Trout
Update template configuration for Django 1.9
tree
|
commitdiff
2016-06-24
Diane Trout
Django 1.9? replaced request.REQUEST with .GET
tree
|
commitdiff
2016-06-24
Diane Trout
Remove unused imports
tree
|
commitdiff
2016-06-24
Diane Trout
Replace import * with explicit list of imports
tree
|
commitdiff
2016-06-24
Diane Trout
Refactor out code to submit a single file from a loop.
tree
|
commitdiff
2016-06-24
Diane Trout
Django 1.9 deprecated string based url names and django...
tree
|
commitdiff
2016-06-24
Diane Trout
Unicode munging for python3
tree
|
commitdiff
2016-06-21
Diane Trout
Implement writing to compressed files for qseq2fastq
tree
|
commitdiff
2016-04-20
Diane Trout
Extract part of get_json into get_response
tree
|
commitdiff
2015-12-03
Diane Trout
report run_type
tree
|
commitdiff
2015-12-03
Diane Trout
report if a flowcell was single or paired ended as...
tree
|
commitdiff
2015-12-03
Diane Trout
remove unused imports and variables
tree
|
commitdiff
2015-11-30
Diane Trout
make a more informative log message
tree
|
commitdiff
2015-11-30
Diane Trout
Read the first sequence out of the fastq to find the...
tree
|
commitdiff
2015-11-30
Diane Trout
refactor encode3 spreadsheet based object creation...
tree
|
commitdiff
2015-10-27
Diane Trout
update dotted path for python3
tree
|
commitdiff
2015-10-27
Diane Trout
update url to new standard url
tree
|
commitdiff
2015-10-27
Diane Trout
Update schema tests for upstreams release 33
tree
|
commitdiff
2015-10-27
Diane Trout
make exception dotted name python3 compliant
tree
|
commitdiff
2015-10-20
Diane Trout
this works better with python 3...
tree
|
commitdiff
2015-10-20
Diane Trout
apparently json.dump can write to a stream
tree
|
commitdiff
2015-10-20
Diane Trout
Add mode to connect to the DCC and make sure the files...
tree
|
commitdiff
2015-10-20
Diane Trout
add knowledge about file links
tree
|
commitdiff
2015-10-20
Diane Trout
updates to deal with encoded 33 path changes
tree
|
commitdiff
2015-10-20
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
tree
|
commitdiff
2015-10-20
Diane Trout
move run_aws_cp command out of class to make it easier...
tree
|
commitdiff
2015-09-24
Diane Trout
Return read_length for file properties
tree
|
commitdiff
2015-09-23
Diane Trout
Use a re.split so we can accept both ', ' and ',' betwe...
tree
|
commitdiff
2015-09-08
Diane Trout
indicate we want text not bytes
tree
|
commitdiff
2015-09-08
Diane Trout
covert to using python3 config.get fallback=
tree
|
commitdiff
2015-07-20
Diane Trout
python3 byte vs str compatibility for constructing...
tree
|
commitdiff
2015-05-21
Diane Trout
Add AccessionAgency and LibraryAccession
tree
|
commitdiff
2015-05-12
Diane Trout
remove unused import
tree
|
commitdiff
2015-05-12
Diane Trout
move experiment templates into the experiments app
tree
|
commitdiff
2015-05-05
Diane Trout
simplify library report
tree
|
commitdiff
2015-05-05
Diane Trout
Move lanes_for from samples to experiments
tree
|
commitdiff
2015-04-06
Diane Trout
Oops I had a test function name collision. Rename one...
tree
|
commitdiff
2015-04-06
Diane Trout
Drop support for simplejson
tree
|
commitdiff
2015-04-06
Diane Trout
Update test to be more robust to changing dictionary...
tree
|
commitdiff
2015-04-06
Diane Trout
fix a white space issue
tree
|
commitdiff
2015-04-06
Diane Trout
convert non-unit-tested module to use newer raise Excep...
tree
|
commitdiff
2015-04-06
Diane Trout
convert several not covered by unit-test modules to...
tree
|
commitdiff
2015-04-06
Diane Trout
Be more careful looking up keys when the fastqname...
tree
|
commitdiff
2015-03-31
Diane Trout
add post_spreadsheet to create encoded objects from...
tree
|
commitdiff
2015-03-31
Diane Trout
also validate documents before creating them
tree
|
commitdiff
2015-03-31
Diane Trout
actually complain if we get the wrong type
tree
|
commitdiff
2015-03-31
Diane Trout
add a docstring to validate
tree
|
commitdiff
2015-03-31
Diane Trout
Add get_accession_name to use collection name to find...
tree
|
commitdiff
2015-03-31
Diane Trout
support trying to figure out object type based on what...
tree
|
commitdiff
2015-03-27
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
tree
|
commitdiff
2015-03-27
Diane Trout
Switch encode3 submitter to use aws.
tree
|
commitdiff
2015-03-27
Diane Trout
Import flowcell details into the triple store from...
tree
|
commitdiff
2015-03-27
Diane Trout
store flowcell name in the triple store if its known
tree
|
commitdiff
2015-03-27
Diane Trout
record file size information for a file in the triple...
tree
|
commitdiff
2015-03-27
Diane Trout
getitem should only return the key
tree
|
commitdiff
2015-03-27
Diane Trout
clean up a bit of whitespace
tree
|
commitdiff
2015-03-20
Diane Trout
configure using a local postgres install
tree
|
commitdiff
2015-03-20
Diane Trout
Convert reads to an integer, if if it was a float in...
tree
|
commitdiff
2015-03-20
Diane Trout
Actually comare an integer (length of list) to an integ...
tree
|
commitdiff
2015-03-20
Diane Trout
Drop library id encoding
tree
|
commitdiff
2015-03-20
Diane Trout
Use regex to make sure scripts end with the right command
tree
|
commitdiff
2015-03-20
Diane Trout
Use six.moves to find urlencode and urlopen
tree
|
commitdiff
2015-03-20
Diane Trout
filter out None c.times in list of potential times
tree
|
commitdiff
2015-03-20
Diane Trout
use relative import for submission_test_common
tree
|
commitdiff
2015-03-20
Diane Trout
Try to detect if an object is a file type on python...
tree
|
commitdiff
2015-03-20
Diane Trout
replace xrange with enumerate
tree
|
commitdiff
2015-03-20
Diane Trout
Use ''.splitlines() instead of split('\n')
tree
|
commitdiff
2015-03-20
Diane Trout
adapt to python2 returning lists and python3 iterators
tree
|
commitdiff
2015-03-20
Diane Trout
use sorted on the iterator instead of an in-place sort
tree
|
commitdiff
2015-03-20
Diane Trout
Use max on the iterator to find the last key
tree
|
commitdiff
2015-03-20
Diane Trout
add more from __future__ import print_function, unicode...
tree
|
commitdiff
2015-03-20
Diane Trout
Call print(msg) instead of print msg
tree
|
commitdiff
2015-03-20
Diane Trout
special case unicode handling that differs between...
tree
|
commitdiff
2015-03-20
Diane Trout
Replace some unicode() with str()
tree
|
commitdiff
2015-03-20
Diane Trout
Use isinstance(object, (types)) pattern instead of...
tree
|
commitdiff
next