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Track which flowcells are archived on which long term storage devices
[htsworkflow.git]
/
scripts
/
2009-06-10
Brandon King
Track which flowcells are archived on which long term...
tree
|
commitdiff
2009-05-06
Diane Trout
Update htsworkflow.util.fctracker module to work with...
tree
|
commitdiff
2009-04-24
Diane Trout
add --clean option to runfolder
tree
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commitdiff
2009-04-24
Diane Trout
Allow picking runfolder variant we should be trying...
tree
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commitdiff
2009-03-31
Diane Trout
provide an error message if no run is found with the...
tree
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commitdiff
2009-03-30
Diane Trout
Allow specifying a run instead of just scanning the...
tree
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commitdiff
2009-03-30
Diane Trout
Add some logging code to report what the program is...
tree
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commitdiff
2009-03-28
Diane Trout
For pipeline 1.1rc1 or 1.3.2, look for the matrix files...
tree
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commitdiff
2009-03-18
Diane Trout
provide more options for picking how much logging info...
tree
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commitdiff
2009-02-27
Diane Trout
Only configure logging if we're being run as a script
tree
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commitdiff
2009-02-13
Diane Trout
use the compression handling auto-opener for our eland...
tree
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commitdiff
2009-01-30
Diane Trout
extended command line configuration parsing and add...
tree
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commitdiff
2009-01-30
Diane Trout
Try to make runfolder results extraction more robust
tree
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commitdiff
2009-01-24
Diane Trout
insert code to do ~ home directory expansion
tree
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commitdiff
2008-12-22
Diane Trout
update make-tree-library script with new default location
tree
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commitdiff
2008-12-22
Diane Trout
clean up the logic for deciding the output filename...
tree
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commitdiff
2008-12-03
Diane Trout
make-library-tree is a tool to maintain caltech's versi...
tree
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commitdiff
2008-11-21
Diane Trout
Use the get_runs from htsworkflow.pipelines.runfolder
tree
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commitdiff
2008-10-30
Diane Trout
The htsworkflow.pipelines.gerald module was getting...
tree
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commitdiff
2008-10-21
Diane Trout
update scripts for the pipeline to pipelines module...
tree
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commitdiff
2008-10-15
Diane Trout
Rename trunk from gaworkflow to htsworkflow (and update...
tree
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commitdiff
2008-09-25
Diane Trout
use _ for field seperator in srf file names. (Using...
tree
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commitdiff
2008-09-18
Diane Trout
Use queuecommands.run not queuecommands.start_job to...
tree
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commitdiff
2008-08-29
Diane Trout
Add support for converting mutli-eland files from pipel...
tree
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commitdiff
2008-08-15
Diane Trout
Improve code to extract runfolder name from the path...
tree
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commitdiff
2008-08-14
Diane Trout
Utility to create srf files from a bustard directory
tree
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commitdiff
2008-08-11
Diane Trout
A bit of refactoring toward making the run progress...
tree
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commitdiff
2008-06-05
Diane Trout
add --extract-results to scripts/runfolder
tree
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commitdiff
2008-05-28
Diane Trout
Compute all the details needed to create our 25bp rerun...
tree
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commitdiff
2008-05-23
Diane Trout
add --run-xml to runfolder so you can generate summary...
tree
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commitdiff
2008-05-15
Diane Trout
add rerun_eland.py which extracts sub-sequences from...
tree
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commitdiff
2008-05-13
Diane Trout
logging.basicConfig should only be in top level scripts.
tree
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commitdiff
2008-05-09
Diane Trout
Move runfolder analysis classes out of scripts/runfolde...
tree
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commitdiff
2008-04-24
Diane Trout
Add a script that takes a set of eland_result files...
tree
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commitdiff
2008-04-24
Diane Trout
Report cluster results with the rest of the lane summar...
tree
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commitdiff
2008-04-22
Diane Trout
oops forgot to remove some debugging statements from...
tree
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commitdiff
2008-04-22
Diane Trout
Extend makebed to lookup metadata out of a copy of...
tree
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commitdiff
2008-04-21
Diane Trout
split the library script into a reusable database/repor...
tree
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commitdiff
2008-04-09
Diane Trout
Add library.py, a script to extract a useful descriptio...
tree
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commitdiff
2008-04-01
Diane Trout
Don't die if Config/FlowcellId.xml is missing warn...
tree
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commitdiff
2008-04-01
Diane Trout
report statistics on the various eland_result sequence...
tree
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commitdiff
2008-03-28
Diane Trout
Don't die if Summary.htm isn't present
tree
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commitdiff
2008-03-28
Diane Trout
rename the summary report to summary_report to distingu...
tree
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commitdiff
2008-03-28
Diane Trout
make the mapped reads summary report more robust
tree
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commitdiff
2008-03-26
Diane Trout
sort the sample mapped reads output
tree
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commitdiff
2008-03-25
Diane Trout
Add documentation about what runfolder.py does
tree
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commitdiff
2008-03-22
Diane Trout
Store the firecrest/bustard/gerald tuple in a new class...
tree
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commitdiff
2008-03-21
Diane Trout
Summarize information from the runfolder.
tree
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commitdiff
2008-03-06
Diane Trout
convert a single-match eland result file into a bed...
tree
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commitdiff
2008-03-06
Diane Trout
Add script to extract some subset of sequence from...
tree
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commitdiff
2008-01-16
Brandon King
Fix for tickets #45 & #47
tree
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commitdiff
2008-01-15
Diane Trout
move the autotmation scripts into gaworkflow.automation
tree
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commitdiff
2008-01-08
Diane Trout
Add script to make it easier to launch runner
tree
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commitdiff
2008-01-04
Brandon King
Runner seems to work with running the pipeline when...
tree
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commitdiff
2008-01-03
Brandon King
Work towards disabling command-line parsing outside...
tree
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commitdiff
2007-12-10
Diane Trout
[project @ make spoolwatcher a benderjab bot]
tree
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commitdiff
2007-11-30
Brandon King
[project @ Allow user to provide FC##### to download...
tree
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commitdiff
2007-11-30
Brandon King
[project @ Small documentation fix for retrieve_config.]
tree
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commitdiff
2007-11-21
Brandon King
[project @ Monitor status implementation + config_pipel...
tree
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commitdiff
2007-11-20
Diane Trout
[project @ move brandon's pipeline handling code into...
tree
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commitdiff
2007-11-20
Diane Trout
[project @ rename python module to gaworkflow from...
tree
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commitdiff
2007-08-10
Diane Trout
[project @ add script to launch copier daemon]
tree
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commitdiff
2007-08-09
Diane Trout
[project @ make a spoolwatcher script]
tree
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commitdiff