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remove cruft from an unimplemented feature
[htsworkflow.git] / scripts /
2009-02-14 Diane Troutremove all caltech pipeline specific code tree | commitdiff
2009-02-13 Diane Troutuse the compression handling auto-opener for our eland... tree | commitdiff
2009-01-30 Diane Troutextended command line configuration parsing and add... tree | commitdiff
2009-01-30 Diane TroutTry to make runfolder results extraction more robust tree | commitdiff
2009-01-24 Diane Troutinsert code to do ~ home directory expansion tree | commitdiff
2008-12-22 Diane Troutupdate make-tree-library script with new default location tree | commitdiff
2008-12-22 Diane Troutclean up the logic for deciding the output filename... tree | commitdiff
2008-12-03 Diane Troutmake-library-tree is a tool to maintain caltech's versi... tree | commitdiff
2008-11-21 Diane TroutUse the get_runs from htsworkflow.pipelines.runfolder tree | commitdiff
2008-10-30 Diane TroutThe htsworkflow.pipelines.gerald module was getting... tree | commitdiff
2008-10-21 Diane Troutupdate scripts for the pipeline to pipelines module... tree | commitdiff
2008-10-15 Diane TroutRename trunk from gaworkflow to htsworkflow (and update... tree | commitdiff
2008-09-25 Diane Troutuse _ for field seperator in srf file names. (Using... tree | commitdiff
2008-09-18 Diane TroutUse queuecommands.run not queuecommands.start_job to... tree | commitdiff
2008-08-29 Diane TroutAdd support for converting mutli-eland files from pipel... tree | commitdiff
2008-08-15 Diane TroutImprove code to extract runfolder name from the path... tree | commitdiff
2008-08-14 Diane TroutUtility to create srf files from a bustard directory tree | commitdiff
2008-08-11 Diane TroutA bit of refactoring toward making the run progress... tree | commitdiff
2008-06-05 Diane Troutadd --extract-results to scripts/runfolder tree | commitdiff
2008-05-28 Diane TroutCompute all the details needed to create our 25bp rerun... tree | commitdiff
2008-05-23 Diane Troutadd --run-xml to runfolder so you can generate summary... tree | commitdiff
2008-05-15 Diane Troutadd rerun_eland.py which extracts sub-sequences from... tree | commitdiff
2008-05-13 Diane Troutlogging.basicConfig should only be in top level scripts. tree | commitdiff
2008-05-09 Diane TroutMove runfolder analysis classes out of scripts/runfolde... tree | commitdiff
2008-04-24 Diane TroutAdd a script that takes a set of eland_result files... tree | commitdiff
2008-04-24 Diane TroutReport cluster results with the rest of the lane summar... tree | commitdiff
2008-04-22 Diane Troutoops forgot to remove some debugging statements from... tree | commitdiff
2008-04-22 Diane TroutExtend makebed to lookup metadata out of a copy of... tree | commitdiff
2008-04-21 Diane Troutsplit the library script into a reusable database/repor... tree | commitdiff
2008-04-09 Diane TroutAdd library.py, a script to extract a useful descriptio... tree | commitdiff
2008-04-01 Diane TroutDon't die if Config/FlowcellId.xml is missing warn... tree | commitdiff
2008-04-01 Diane Troutreport statistics on the various eland_result sequence... tree | commitdiff
2008-03-28 Diane TroutDon't die if Summary.htm isn't present tree | commitdiff
2008-03-28 Diane Troutrename the summary report to summary_report to distingu... tree | commitdiff
2008-03-28 Diane Troutmake the mapped reads summary report more robust tree | commitdiff
2008-03-26 Diane Troutsort the sample mapped reads output tree | commitdiff
2008-03-25 Diane TroutAdd documentation about what runfolder.py does tree | commitdiff
2008-03-22 Diane TroutStore the firecrest/bustard/gerald tuple in a new class... tree | commitdiff
2008-03-21 Diane TroutSummarize information from the runfolder. tree | commitdiff
2008-03-06 Diane Troutconvert a single-match eland result file into a bed... tree | commitdiff
2008-03-06 Diane TroutAdd script to extract some subset of sequence from... tree | commitdiff
2008-01-16 Brandon KingFix for tickets #45 & #47 tree | commitdiff
2008-01-15 Diane Troutmove the autotmation scripts into gaworkflow.automation tree | commitdiff
2008-01-08 Diane TroutAdd script to make it easier to launch runner tree | commitdiff
2008-01-04 Brandon KingRunner seems to work with running the pipeline when... tree | commitdiff
2008-01-03 Brandon KingWork towards disabling command-line parsing outside... tree | commitdiff
2007-12-10 Diane Trout[project @ make spoolwatcher a benderjab bot] tree | commitdiff
2007-11-30 Brandon King[project @ Allow user to provide FC##### to download... tree | commitdiff
2007-11-30 Brandon King[project @ Small documentation fix for retrieve_config.] tree | commitdiff
2007-11-21 Brandon King[project @ Monitor status implementation + config_pipel... tree | commitdiff
2007-11-20 Diane Trout[project @ move brandon's pipeline handling code into... tree | commitdiff
2007-11-20 Diane Trout[project @ rename python module to gaworkflow from... tree | commitdiff
2007-08-10 Diane Trout[project @ add script to launch copier daemon] tree | commitdiff
2007-08-09 Diane Trout[project @ make a spoolwatcher script] tree | commitdiff
htsworkflow sequencing LIMS software