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make a more informative log message
2015-11-30
Diane Trout
make a more informative log message
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2015-11-30
Diane Trout
Read the first sequence out of the fastq to find the...
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2015-10-20
Diane Trout
this works better with python 3...
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2015-10-20
Diane Trout
apparently json.dump can write to a stream
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2015-10-20
Diane Trout
Add mode to connect to the DCC and make sure the files...
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2015-09-24
Diane Trout
Return read_length for file properties
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2015-09-23
Diane Trout
Use a re.split so we can accept both ', ' and ',' between...
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2015-09-08
Diane Trout
indicate we want text not bytes
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2015-09-08
Diane Trout
covert to using python3 config.get fallback=
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2015-09-08
Diane Trout
convert from optparse to argparse
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2015-09-08
Diane Trout
add some documentation -- shocking I know
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2015-03-27
Diane Trout
Switch encode3 submitter to use aws.
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2015-03-27
Diane Trout
Import flowcell details into the triple store from...
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2015-03-27
Diane Trout
store flowcell name in the triple store if its known
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2015-03-27
Diane Trout
record file size information for a file in the triple...
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2015-03-27
Diane Trout
Adjust logging overrides and move django.setup to after...
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2015-03-27
Diane Trout
getitem should only return the key
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2015-03-27
Diane Trout
clean up a bit of whitespace
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2014-12-13
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htsworkflow...
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2014-12-13
Diane Trout
Add document registration class.
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2014-12-13
Diane Trout
add more type checking for parsing object type from...
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2014-12-13
Diane Trout
add some helpful log messages
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2014-10-27
Diane Trout
comment out benderjab dependency, as were not using...
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2014-10-27
Diane Trout
Change the settings default to work with the two scoops...
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2014-06-19
Diane Trout
Add fields list to a few ModelForms Meta class.
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2014-06-19
Diane Trout
Rename get_query_set to get_queryset
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2014-06-19
Diane Trout
Rename HttpResponse parameter mimetype to content_type
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2014-06-19
Diane Trout
remove file created by typoing file name
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2014-06-19
Diane Trout
Change unittest2 back into unittest.
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2014-06-10
Diane Trout
Directly generate compressed fastq files from HiSeq...
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2014-06-10
Diane Trout
the filename templates were moved from condorfastq...
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2014-06-10
Diane Trout
Indicate when desplit_fastq didn't get any files to...
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2014-06-10
Diane Trout
Make sure we can load a run file that lacks alignment...
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2014-06-10
Diane Trout
Ignore the path when comparing filenames from the md5...
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2014-01-22
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2014-01-22
Diane Trout
pass filters a string not an undefined variable
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2013-12-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2013-12-23
Diane Trout
update settings for new location of WSGI_APPLICATION...
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2013-12-23
Diane Trout
fix quote typos with the {% static %} template tag
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2013-12-23
Diane Trout
Move wsgi into the actual project root.
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2013-12-17
Diane Trout
Update WSGI_APPLICATION to point to the updated location...
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2013-12-17
Diane Trout
Start simplyfing settings by using from settings_local...
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2013-12-17
Diane Trout
add new wsgi.py driver
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2013-12-17
Diane Trout
Update templates to consistently use {% static %} instead...
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2013-12-17
Diane Trout
Move loading DTD into a function as the call caused...
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2013-12-17
Diane Trout
move django imports around, change one function call...
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2013-12-17
Diane Trout
Update exception caught for newer django?
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2013-12-17
Diane Trout
use url function call for url definition instead of...
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2013-12-17
Diane Trout
Move use of settings default into the function instead...
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2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-12-09
Diane Trout
Add new paired library types to our hackish list for...
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2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
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2013-12-06
Diane Trout
Attempt to be robust to not having an alignment in...
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2013-12-05
Diane Trout
fix typo
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2013-12-05
Diane Trout
fix typo
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2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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2013-12-05
Diane Trout
Update for UCSC's validate manifest 1.7
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2013-12-05
Diane Trout
Provide reporting of what command failed when bigWigInfo...
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2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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2013-12-05
Diane Trout
Add a way to report what url was failing
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2013-12-02
Diane Trout
Catch and report another class of exception
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2013-10-21
Diane Trout
Pass additional information to the trackhub.
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2013-10-17
Diane Trout
Add command line feature to srf command
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2013-10-17
Diane Trout
Dynamically respond to the number of lanes.
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2013-10-17
Diane Trout
Fix typo.
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2013-10-17
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-10-11
Diane Trout
Make it possible to set a label on a track.
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2013-10-09
Diane Trout
add replaces / replace_reason generation to trackhub...
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2013-10-09
Diane Trout
remove spurious newline
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2013-10-08
Diane Trout
Be more forgiving about the md5sum filename path
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2013-10-08
Diane Trout
Add helpful logging information to explain missing...
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2013-07-03
Diane Trout
Generate manifest files for ENCODE3
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2013-07-01
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-07-01
Diane Trout
Add the option to copy tree in addition to making a...
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2013-02-01
Diane Trout
Preliminary implementation of trackDb generation.
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2013-02-01
Diane Trout
Forgot to import an exception I used
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2013-02-01
Diane Trout
Make a sample key list to go along with our lane list
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2013-01-16
Diane Trout
Support scanning HiSeq runs with multiple analyses.
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2013-01-16
Diane Trout
Thrown an exception if we can't parse base calling...
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2013-01-15
Diane Trout
Start making documentation for htsworkflow.
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2013-01-09
Diane Trout
A better resolution to a possible circular dependency.
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2013-01-09
Diane Trout
Don't accidentally transform an object into a tuple.
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2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...
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2013-01-08
Diane Trout
Try to make Aligned result directories optional in...
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2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
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2013-01-08
Diane Trout
Tweak timestamp format.
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2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
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2012-12-14
Diane Trout
Make my ChangeList sub-class compatibile with Django 1.3
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2012-12-13
Diane Trout
Make the inventory pages work with the new HTSChangeList.
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2012-12-13
Diane Trout
Django 1.4 requires the csrf token for posts.
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2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
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2012-12-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow...
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2012-12-12
Diane Trout
Simplify linking fastq files to their library id.
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2012-12-08
Diane Trout
Add a FastqName class to create and parse standardized...
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2012-11-30
Diane Trout
Change my copied version of admin.changelist to a subclass.
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2012-11-30
Diane Trout
The formatting for the model name changed.
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2012-11-29
Diane Trout
Add a few more records for django db initial_data.json.
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2012-11-29
Diane Trout
Use unittest2's module hooks for setting up the django...
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2012-11-29
Diane Trout
Change csrf imports and database settings for django 1.4
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