woldlab.caltech.edu Git - htsworkflow.git/search

2011-06-15	Diane Trout	Add module to parse UCSC DAF file.	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Move code to make srf and qseq to fastq condor scripts...	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Sample Test RDFA needed the flowcell id field	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Remove some uneeded linefeeds	commit \| commitdiff \| tree
2011-06-14	Diane Trout	Fix a template typo	commit \| commitdiff \| tree
2011-06-13	Diane Trout	Supprose IVC plot table rows if we don't have data...	commit \| commitdiff \| tree
2011-06-13	Diane Trout	Follow the flowcell link from the library page.	commit \| commitdiff \| tree
2011-06-13	Diane Trout	The get_permanent_link function on the flowcell model...	commit \| commitdiff \| tree
2011-06-13	Diane Trout	Remove some now unnecessary coments and reformat some...	commit \| commitdiff \| tree
2011-06-11	Diane Trout	python's 2.6 uuid function doesn't cast to a string...	commit \| commitdiff \| tree
2011-06-11	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-11	Diane Trout	Convert Rami's DataRun feature to something useful...	commit \| commitdiff \| tree
2011-06-09	Diane Trout	Move test srf files to testdata directory so I can...	commit \| commitdiff \| tree
2011-06-09	Diane Trout	Add a method to return the runfolder name.	commit \| commitdiff \| tree
2011-05-27	Diane Trout	Add in test code to verify RDF data being added to...	commit \| commitdiff \| tree
2011-05-27	Diane Trout	Trivial change, add human to common name of "homo sapiens"	commit \| commitdiff \| tree
2011-05-26	Diane Trout	Merge branch 'add-condition'	commit \| commitdiff \| tree
2011-05-25	Diane Trout	Make antibody & condition visible.	commit \| commitdiff \| tree
2011-05-18	Diane Trout	Write the librdf model database somewhere other than...	commit \| commitdiff \| tree
2011-05-16	Diane Trout	Pretty print the json files to help debugging	commit \| commitdiff \| tree
2011-05-16	Diane Trout	Allow configuring additional database settings so we...	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Add fake settings.py file point to the real htsworkflow...	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Move default_pm setting to a little more predictable...	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Keep moving settings around until I can find a place...	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Add utility program to help find what exists in georgi...	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Report missing directory names to help diagnose sequence...	commit \| commitdiff \| tree
2011-05-09	Diane Trout	Validate fastq files in both phred33 & phred64 versions	commit \| commitdiff \| tree
2011-04-18	Diane Trout	Be more flexible with fastq filenames.	commit \| commitdiff \| tree
2011-04-06	Diane Trout	django-nose didn't work with django 1.1, so I went...	commit \| commitdiff \| tree
2011-04-05	Diane Trout	Adjust django driver script to test the whole package.	commit \| commitdiff \| tree
2011-04-05	Diane Trout	Revert a bad change. Apparently past me knew what I...	commit \| commitdiff \| tree
2011-04-05	Diane Trout	remove spurious debugging print	commit \| commitdiff \| tree
2011-04-02	Diane Trout	Remove spurious debug print statements	commit \| commitdiff \| tree
2011-04-02	Diane Trout	Fix a typo inserted into the template.	commit \| commitdiff \| tree
2011-04-02	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-04-02	Diane Trout	Add pages to show information about a particular flowcell.	commit \| commitdiff \| tree
2011-03-30	Diane Trout	Update single vs paired guessing code	commit \| commitdiff \| tree
2011-03-09	Diane Trout	Update spoolwatcher to 0.2 benderjab's logging api	commit \| commitdiff \| tree
2011-03-07	Diane Trout	Move some common runfolder path management code into...	commit \| commitdiff \| tree
2011-03-07	Diane Trout	Add a place for "breadcrumbs" back into the base.html...	commit \| commitdiff \| tree
2011-02-26	Diane Trout	Ignore emacs backup files for things other than python...	commit \| commitdiff \| tree
2011-02-26	Diane Trout	Save the overrides to the RDF model.	commit \| commitdiff \| tree
2011-02-26	Diane Trout	Only pull web data when its missing from the rdf model.	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Major updateds to encode_find for extracting encode...	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Only use one name for dates on the page.	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Minor RDFa cleanups	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Change default font size to 14pt	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Add RDFa data to our library pages.	commit \| commitdiff \| tree
2011-02-17	Diane Trout	Add a small comment defining "results_dir"	commit \| commitdiff \| tree
2011-02-16	Diane Trout	Add in patterns for Encode Elements submission	commit \| commitdiff \| tree
2011-02-15	Diane Trout	Starting component to try and figure out what we've...	commit \| commitdiff \| tree
2011-02-15	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-02-15	Diane Trout	Make plus/minus bigwig filename extension a bit more...	commit \| commitdiff \| tree
2011-02-14	Diane Trout	Add in support for generating md5sums for files	commit \| commitdiff \| tree
2011-02-07	Diane Trout	Add in a little bit of qseq2fastq testing code. More...	commit \| commitdiff \| tree
2011-02-07	Diane Trout	Add documentation about which Phred format we're generating	commit \| commitdiff \| tree
2011-02-03	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-02-03	Diane Trout	First cycle can be 2 digit.	commit \| commitdiff \| tree
2011-01-25	Diane Trout	Fix typo in a function name.	commit \| commitdiff \| tree
2011-01-25	Diane Trout	Add in 12x / 18x PCR protocol end points from Lorian	commit \| commitdiff \| tree
2011-01-25	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-01-25	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-01-21	Diane Trout	Update view names as per Cricket for the Jan 21st encode...	commit \| commitdiff \| tree
2011-01-21	Diane Trout	Merge branch 'master' of gitosis@mus.cacr.caltech.edu...	commit \| commitdiff \| tree
2011-01-21	Diane Trout	Add function to ucsc submission tool to make symlink...	commit \| commitdiff \| tree
2011-01-12	Diane Trout	Include version.py in source distribution for setup.py	commit \| commitdiff \| tree
2011-01-08	Diane Trout	Add validation script	commit \| commitdiff \| tree
2011-01-04	Diane Trout	Rename all the scripts to start with htsw-	commit \| commitdiff \| tree
2010-12-21	Diane Trout	Add utility to fix the off-by-3 error in the amplified...	commit \| commitdiff \| tree
2010-12-02	Diane Trout	Make the inventory login page look a bit nicer.	commit \| commitdiff \| tree
2010-12-02	Diane Trout	Adjust some whitespace	commit \| commitdiff \| tree
2010-12-01	Diane Trout	This mildly adjusts the css to be a bit prettier	commit \| commitdiff \| tree
2010-12-01	Diane Trout	Add a new ini-file option to point to the flowcell...	commit \| commitdiff \| tree
2010-11-30	Diane Trout	Add config option notification_bcc for always attaching...	commit \| commitdiff \| tree
2010-11-17	Diane Trout	Cache the attributes for each type of fastq file.	commit \| commitdiff \| tree
2010-11-16	Diane Trout	Map junctions.bed to the Junctions view.	commit \| commitdiff \| tree
2010-11-16	Diane Trout	Autodetect location of *2fastq scripts	commit \| commitdiff \| tree
2010-11-15	Diane Trout	Don't count failed flowcells when guessing if a library...	commit \| commitdiff \| tree
2010-11-07	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2010-11-07	Diane Trout	Very basic non-ExtJS version of the inventory page	commit \| commitdiff \| tree
2010-11-07	Diane Trout	Remove another ExtJS panel reference.	commit \| commitdiff \| tree
2010-11-05	Diane Trout	Update to the new UCSC DAF file.	commit \| commitdiff \| tree
2010-11-03	Diane Trout	Create a class to handle mapping extension to ucsc...	commit \| commitdiff \| tree
2010-11-02	Diane Trout	Two lines between functions (trivial change)	commit \| commitdiff \| tree
2010-11-01	Diane Trout	Only complane about missing genomes if we _wanted_...	commit \| commitdiff \| tree
2010-11-01	Diane Trout	Check for s_${lane}_02_matrix.txt as well as s_${lane...	commit \| commitdiff \| tree
2010-10-28	Diane Trout	Remove dependency on ExtJS for library & lanes_for...	commit \| commitdiff \| tree
2010-10-27	Diane Trout	The WITH_SEQUENCE flag needs to be lower-case "true".	commit \| commitdiff \| tree
2010-10-22	Diane Trout	Report version number derived from git tag.	commit \| commitdiff \| tree
2010-10-19	Diane Trout	Set WITH_SEQUENCE as both a per-lane AND global parameter	commit \| commitdiff \| tree
2010-10-08	Diane Trout	WITH_SEQUENCE is actually a global GERALD option, remove...	commit \| commitdiff \| tree
2010-10-07	Diane Trout	Update gerald config file generation.	commit \| commitdiff \| tree
2010-09-30	Diane Trout	Ignore some files generated by python	commit \| commitdiff \| tree
2010-09-24	Diane Trout	Adjust spoolwatchers use of inotify to correspond to...	commit \| commitdiff \| tree
2010-09-24	Diane Trout	Handle the case when a sequencing lane lacks any yield...	commit \| commitdiff \| tree
2010-09-24	Diane Trout	Remind myself that dry-run doesn't work with the extract...	commit \| commitdiff \| tree
2010-09-10	Diane Trout	Add support for CASAVA 1.7	commit \| commitdiff \| tree
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htsworkflow sequencing LIMS software

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