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htsworkflow.git
2013-12-17 Diane TroutMove use of settings default into the function instead... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutUpdate manage script to django 1.6 commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutBeing able to filter on paired end runs might be useful commit | commitdiff | tree | snapshot
2013-12-10 Diane Troutremove deprecated module django.contrib.databrowse commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutWith 1.6 boolean field changed to default Null, so... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutDjango 1.6 is pickier about enforcing referential integrity commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutFix urls patterns import to be compatible with django 1.6 commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-09 Diane TroutAdd new paired library types to our hackish list for... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAttempt to be robust to not having an alignment in... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... commit | commitdiff | tree | snapshot
2013-12-05 Diane Troutfix typo commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutUpdate for UCSC's validate manifest 1.7 commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutProvide reporting of what command failed when bigWigInf... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutAdd a way to report what url was failing commit | commitdiff | tree | snapshot
2013-12-02 Diane TroutCatch and report another class of exception commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutPass additional information to the trackhub. commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutMerge branch 'master' into django1.4 commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutFix typo. commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutImplement a wrapper around bigWigInfo to report bigWig... commit | commitdiff | tree | snapshot
2013-10-11 Diane TroutMake it possible to set a label on a track. commit | commitdiff | tree | snapshot
2013-10-09 Diane Troutadd replaces / replace_reason generation to trackhub... commit | commitdiff | tree | snapshot
2013-10-09 Diane Troutremove spurious newline commit | commitdiff | tree | snapshot
2013-10-08 Diane TroutBe more forgiving about the md5sum filename path commit | commitdiff | tree | snapshot
2013-10-08 Diane TroutAdd helpful logging information to explain missing... commit | commitdiff | tree | snapshot
2013-09-24 Diane TroutShare more code to generate result tree. commit | commitdiff | tree | snapshot
2013-08-12 Diane TroutUpdate test data for renamed library type. commit | commitdiff | tree | snapshot
2013-08-10 Diane TroutAdd sortOrder and filtering parameters to the trackhub. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutMove version finding code into the util directory. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutTest changes to submission code. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. commit | commitdiff | tree | snapshot
2013-07-22 Diane Troutturtle writing improvements. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutAdd a generator that returns analysis nodes from a... commit | commitdiff | tree | snapshot
2013-07-20 Diane TroutAdd python namespace for encode3 RDF namespace commit | commitdiff | tree | snapshot
2013-07-18 Diane TroutAdd function to list the names for submissions from... commit | commitdiff | tree | snapshot
2013-07-17 Diane TroutAdd function to parse scp / ssh style URLs. commit | commitdiff | tree | snapshot
2013-07-16 Diane TroutDeleting commented out code. commit | commitdiff | tree | snapshot
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. commit | commitdiff | tree | snapshot
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... commit | commitdiff | tree | snapshot
2013-07-01 Diane Trouttype checking more detailed than Literal doesn't work... commit | commitdiff | tree | snapshot
2013-06-28 Diane TroutAdd option to copy source files for a submission. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutFurther improve reliability of make_tree_from. commit | commitdiff | tree | snapshot
2013-06-18 Diane Troutcopy_tree_from wasn't actually making any symlinks. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutUpdate tests for new version of redland rdf lib. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutRemove deprecated adminmedia template tag from loader. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutReplace deprecated django.contrib adminmedia with stati... commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutUse proper User model import. commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutForgot to import an exception I used commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutMake a sample key list to go along with our lane list commit | commitdiff | tree | snapshot
2013-01-16 dianeAdd more entries to genome version detection map. commit | commitdiff | tree | snapshot
2013-01-16 Diane TroutSupport scanning HiSeq runs with multiple analyses. commit | commitdiff | tree | snapshot
2013-01-16 Diane TroutThrown an exception if we can't parse base calling... commit | commitdiff | tree | snapshot
2013-01-15 Diane TroutStart making documentation for htsworkflow. commit | commitdiff | tree | snapshot
2013-01-09 Diane TroutA better resolution to a possible circular dependency. commit | commitdiff | tree | snapshot
2013-01-09 Diane TroutDon't accidentally transform an object into a tuple. commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutTry to make Aligned result directories optional in... commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutAdd unaligned stats files to hiseq test case commit | commitdiff | tree | snapshot
2013-01-08 Diane TroutTweak timestamp format. commit | commitdiff | tree | snapshot
2012-12-14 Diane TroutGerald's time-stamp format was inconsistent. commit | commitdiff | tree | snapshot
2012-12-14 Diane TroutMake my ChangeList sub-class compatibile with Django 1.3 commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutMake the inventory pages work with the new HTSChangeList. commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutDjango 1.4 requires the csrf token for posts. commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutUse specific time formatting instead of locale '%c' commit | commitdiff | tree | snapshot
2012-12-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkfl... commit | commitdiff | tree | snapshot
2012-12-12 Diane TroutSimplify linking fastq files to their library id. commit | commitdiff | tree | snapshot
2012-12-08 Diane TroutAdd a FastqName class to create and parse standardized... commit | commitdiff | tree | snapshot
2012-11-30 Diane TroutChange my copied version of admin.changelist to a subclass. commit | commitdiff | tree | snapshot
2012-11-30 Diane TroutThe formatting for the model name changed. commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutAdd a few more records for django db initial_data.json. commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutUse unittest2's module hooks for setting up the django... commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutChange csrf imports and database settings for django 1.4 commit | commitdiff | tree | snapshot
2012-11-29 Diane TroutRemove prints that were being called in test code. commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutChanged name= to verbose_name= for LibraryType. commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutMake extra sure Django's setup test environment is... commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutConvert to unittest2 commit | commitdiff | tree | snapshot
2012-11-28 Diane TroutConvert to unittest2 commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutIgnoring the missing type RDF error for the page under... commit | commitdiff | tree | snapshot
2012-11-27 Diane TroutAdd dependencies to the setup.py commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutTest presence of species & species name on library... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutCorrectly implement merging Notification & Manager... commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutRenamed various django tests.py to test_module.py commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutIgnore .tox directory commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutFix RDF schema problems with lane_number and species. commit | commitdiff | tree | snapshot
2012-11-20 Diane TroutRun the library detail page through RDF validation. commit | commitdiff | tree | snapshot
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