| 2008-09-18 |
Diane Trout | Use queuecommands.run not queuecommands.start_job to... |
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| 2008-09-18 |
Diane Trout | Be a little more informative about how many process... |
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| 2008-09-05 |
Diane Trout | extract status field out of flowcell name. |
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| 2008-08-29 |
Diane Trout | Add support for converting mutli-eland files from pipel... |
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| 2008-08-29 |
Diane Trout | insert stub clean_runs function to list roughly what... |
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| 2008-08-15 |
Diane Trout | Improve code to extract runfolder name from the path... |
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| 2008-08-14 |
Diane Trout | In trying to get scripts/srf to work I needed to set... |
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| 2008-08-14 |
Diane Trout | refactor code to make a runfolder out of the UnitTest... |
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| 2008-08-14 |
Diane Trout | we might as well automatically save the Summary.htm... |
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| 2008-08-14 |
Diane Trout | Utility to create srf files from a bustard directory |
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| 2008-08-11 |
Diane Trout | A bit of refactoring toward making the run progress... |
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| 2008-07-16 |
Diane Trout | The older pipeline runs had a Phi-X control lane which... |
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| 2008-07-15 |
Diane Trout | Provide cross referencing information to the libraries... |
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| 2008-07-07 |
Diane Trout | Finish updating the Summary parsing file to handle... |
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| 2008-07-03 |
Diane Trout | Partially handle the changed Summary.htm file from... |
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| 2008-06-24 |
Diane Trout | Detect if our watch is on a mount point. |
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| 2008-06-17 |
Diane Trout | Add QueueCommands, a class that allows controlling... |
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| 2008-06-06 |
Diane Trout | don't use os.path.normpath when pathname is null in... |
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| 2008-06-05 |
Diane Trout | add --extract-results to scripts/runfolder |
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| 2008-05-29 |
Diane Trout | Some of the older flow cells used a default genome... |
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| 2008-05-28 |
Diane Trout | Compute all the details needed to create our 25bp rerun... |
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| 2008-05-27 |
Diane Trout | ignore more *.py[co~] files in some of our test directories |
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| 2008-05-23 |
Diane Trout | add --run-xml to runfolder so you can generate summary... |
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| 2008-05-23 |
Diane Trout | Update pipeline.gerald to handle eland_result files... |
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| 2008-05-19 |
Brandon King | Begining of consolidation with trunk/stanford variatant... |
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| 2008-05-15 |
Diane Trout | add rerun_eland.py which extracts sub-sequences from... |
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| 2008-05-14 |
Diane Trout | separate computing the sample/lane_id names from calcul... |
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| 2008-05-14 |
Brandon King | v0.2.0 progress |
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| 2008-05-13 |
Diane Trout | add additional debugging logging to retrieve_config... |
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| 2008-05-13 |
Diane Trout | logging.basicConfig should only be in top level scripts. |
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| 2008-05-10 |
Diane Trout | make it possible to include all alignments, not just... |
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| 2008-05-10 |
Diane Trout | makebed is a script too |
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| 2008-05-10 |
Diane Trout | Keep track of sample_name and lane_id computed from... |
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| 2008-05-09 |
Diane Trout | Make the runfolder splitting patch a bit more python... |
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| 2008-05-09 |
Diane Trout | update the setup.py file to the new name for the runfol... |
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| 2008-05-09 |
Diane Trout | Move runfolder analysis classes out of scripts/runfolde... |
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| 2008-04-24 |
Diane Trout | Add a script that takes a set of eland_result files... |
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| 2008-04-24 |
Diane Trout | Report cluster results with the rest of the lane summar... |
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| 2008-04-22 |
Diane Trout | also since nothing is currently using the pipelineFinis... |
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| 2008-04-22 |
Diane Trout | oops forgot to remove some debugging statements from... |
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| 2008-04-22 |
Diane Trout | Extend makebed to lookup metadata out of a copy of... |
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| 2008-04-21 |
Diane Trout | split the library script into a reusable database/repor... |
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| 2008-04-21 |
Diane Trout | Ignore binary files generated by python (*.py[co]) |
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| 2008-04-19 |
Lorian Schaeffer | Added the same changes I made to the 1.1 branch, all... |
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| 2008-04-09 |
Diane Trout | Add library.py, a script to extract a useful descriptio... |
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| 2008-04-01 |
Diane Trout | Don't die if Config/FlowcellId.xml is missing warn... |
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| 2008-04-01 |
Diane Trout | report statistics on the various eland_result sequence... |
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| 2008-03-28 |
Diane Trout | Don't die if Summary.htm isn't present |
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| 2008-03-28 |
Diane Trout | rename the summary report to summary_report to distingu... |
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| 2008-03-28 |
Diane Trout | make the mapped reads summary report more robust |
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| 2008-03-27 |
Diane Trout | Add runfolder.py to the list of scripts |
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| 2008-03-26 |
Diane Trout | sort the sample mapped reads output |
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| 2008-03-25 |
Diane Trout | Add documentation about what runfolder.py does |
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| 2008-03-25 |
Lorian Schaeffer | Put ten_nM_dilution field back in library table, and... |
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| 2008-03-22 |
Diane Trout | Store the firecrest/bustard/gerald tuple in a new class... |
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| 2008-03-21 |
Diane Trout | Summarize information from the runfolder. |
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| 2008-03-21 |
Lorian Schaeffer | Hopefully undid accidental changes to views.py and... |
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| 2008-03-21 |
Lorian Schaeffer | Added a dropdown status field to flowcell table |
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| 2008-03-20 |
Lorian Schaeffer | Created table Person, with required fields "name" and... |
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| 2008-03-20 |
Lorian Schaeffer | Flowcell patch: |
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| 2008-03-20 |
Lorian Schaeffer | Removed fields kit_#_lot from library table (they were... |
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| 2008-03-19 |
Lorian Schaeffer | Library patch: |
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| 2008-03-06 |
Diane Trout | convert a single-match eland result file into a bed... |
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| 2008-03-06 |
Diane Trout | Add script to extract some subset of sequence from... |
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| 2008-01-29 |
Diane Trout | DummyOptions didn't define a genome_dir member before... |
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| 2008-01-23 |
Diane Trout | return most recent genome build for the pipeline config... |
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| 2008-01-23 |
Brandon King | Latest genome build, eland_config file temp. solution... |
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| 2008-01-17 |
Brandon King | Added a new get_cycles(recipe_xml_filepath) function in |
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| 2008-01-16 |
Brandon King | Spoolwatch function for getting cycle number from Recip... |
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| 2008-01-16 |
Brandon King | Attempt to support case insensitive config file names. |
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| 2008-01-16 |
Brandon King | Fix for tickets #45 & #47 |
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| 2008-01-15 |
Diane Trout | Oops, forgot to provide a null body to my the stub... |
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| 2008-01-15 |
Diane Trout | pyinotify rm_watch takes a list, not a dictionary. |
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| 2008-01-15 |
Diane Trout | Update test_copier to reflect copiers move to gaworkflo... |
commit | commitdiff | tree | snapshot |
| 2008-01-15 |
Diane Trout | move the autotmation scripts into gaworkflow.automation |
commit | commitdiff | tree | snapshot |
| 2008-01-11 |
Diane Trout | Add the xmi file from umbrello documenting our basic... |
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| 2008-01-09 |
Diane Trout | always trigger a copy when we receive the sequencingFin... |
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| 2008-01-08 |
Diane Trout | tell subversion to ignore *.py[co~] files |
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| 2008-01-08 |
Diane Trout | make sequencingFinished return something instead of... |
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| 2008-01-08 |
Diane Trout | Remove unnecessary code from the runner.py module |
commit | commitdiff | tree | snapshot |
| 2008-01-08 |
Diane Trout | Add script to make it easier to launch runner |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Diane Trout | use \w for alphanumeric flow cell IDs |
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| 2008-01-04 |
Brandon King | Runner now reports status when user sends status request! |
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| 2008-01-04 |
Brandon King | Runner now notifies users about success or failure... |
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| 2008-01-04 |
Brandon King | Runner seems to work with running the pipeline when... |
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| 2008-01-04 |
Brandon King | Work towards getting runner to work properly. |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Ok, one more option required. |
commit | commitdiff | tree | snapshot |
| 2008-01-04 |
Brandon King | Forgot an option in the DummyOptions object. |
commit | commitdiff | tree | snapshot |
| 2008-01-03 |
Brandon King | Work towards disabling command-line parsing outside... |
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| 2008-01-02 |
Brandon King | Updated regexs to support new and "improved" flow cell... |
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| 2007-12-30 |
Diane Trout | direntry parser wasn't eating a trailing newline |
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| 2007-12-30 |
Diane Trout | forgot to rename the caller and called when refactoring... |
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| 2007-12-30 |
Diane Trout | split rsync directory listing correctly |
commit | commitdiff | tree | snapshot |
| 2007-12-22 |
Diane Trout | add a , to make customizing list of template dirs easier |
commit | commitdiff | tree | snapshot |
| 2007-12-21 |
Brandon King | Work towards a working runner bot... still needs a... |
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| 2007-12-14 |
Brandon King | [project @ gaworkflow.runner progress] |
commit | commitdiff | tree | snapshot |
| 2007-12-11 |
Diane Trout | [project @ add skeleton for runner] |
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| 2007-12-11 |
Diane Trout | [project @ send messages to notify_runner not self... |
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| 2007-12-11 |
Brandon King | [project @ Bypass pipe lock mystery bug for configure... |
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| 2007-12-11 |
Diane Trout | [project @ add a parser to spoolwatcher] |
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