| 2009-03-30 |
Diane Trout | Allow specifying a run instead of just scanning the... |
commit | commitdiff | tree | snapshot |
| 2009-03-30 |
Diane Trout | Add some logging code to report what the program is... |
commit | commitdiff | tree | snapshot |
| 2009-03-28 |
Diane Trout | For pipeline 1.1rc1 or 1.3.2, look for the matrix files... |
commit | commitdiff | tree | snapshot |
| 2009-03-28 |
Diane Trout | Move sample data from simulate_runfolder into testdata |
commit | commitdiff | tree | snapshot |
| 2009-03-25 |
Diane Trout | Make the visiable names match how the "group" and ... |
commit | commitdiff | tree | snapshot |
| 2009-03-20 |
Diane Trout | Consume output form the subprocesses |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | Actually we want fastq files, not scarf files |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | Generate a gerald config file, even if the genome is... |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | provide more options for picking how much logging info... |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | only report cwd when starting the queue monitor, not... |
commit | commitdiff | tree | snapshot |
| 2009-03-18 |
Diane Trout | ignore *.py[co] files |
commit | commitdiff | tree | snapshot |
| 2009-03-16 |
Diane Trout | Parse runfolders generated with IPAR 1.3 and pipeline... |
commit | commitdiff | tree | snapshot |
| 2009-03-12 |
Diane Trout | Use django's FilteredSelectMultiple javascript widget... |
commit | commitdiff | tree | snapshot |
| 2009-03-12 |
Diane Trout | allow searching by cluster station or sequencer name... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | We can't search linked tables. This is a problem that... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | The public library page needed to pass eland.genome_map... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | Improve support for eland searching a single fasta... |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | Use gigio's fully name instead of nickname |
commit | commitdiff | tree | snapshot |
| 2009-03-10 |
Diane Trout | Let cluster_station and sequencer default to the first... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | replace % with %% in the library names, so retrieve... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Change flowcell admin index page to include a formatted... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Change default picomolarity to 5, and allow overriding... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Add commented htsworkflow.ini.example as documentation... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Sort by library id, not creation data closes [ticket... |
commit | commitdiff | tree | snapshot |
| 2009-03-09 |
Diane Trout | Add flowcell notes field back to the admin page |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | flowcell model moved from samples to experiments, eland... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | The default django css pages wanted a few gifs, which... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Grab more of the admin css pages that were refering... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Display the pM on the public library detail page. |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Allow filtering by the new hidden field on the library... |
commit | commitdiff | tree | snapshot |
| 2009-03-07 |
Diane Trout | Lorian asked that the library size default to 225 when... |
commit | commitdiff | tree | snapshot |
| 2009-03-06 |
Diane Trout | Make the public library browsing page support several... |
commit | commitdiff | tree | snapshot |
| 2009-03-06 |
Diane Trout | Add another username to manage for our made_for to... |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | Add get_absolute_url to Library model and use it for... |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | Implement experiment type as a seperate table. |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | Change cluster_mac_id and seq_mac_id from text fields... |
commit | commitdiff | tree | snapshot |
| 2009-03-04 |
Diane Trout | For one of our more recent libraries, the successful_pM... |
commit | commitdiff | tree | snapshot |
| 2009-02-28 |
Diane Trout | Add a link to the public library summary page off from... |
commit | commitdiff | tree | snapshot |
| 2009-02-27 |
Diane Trout | Add my script to convert Caltech's made_for field to... |
commit | commitdiff | tree | snapshot |
| 2009-02-27 |
Diane Trout | Update some of Rami's GERALD config file generator... |
commit | commitdiff | tree | snapshot |
| 2009-02-27 |
Diane Trout | Only configure logging if we're being run as a script |
commit | commitdiff | tree | snapshot |
| 2009-02-26 |
Diane Trout | better handle the case when Affilations.contact is... |
commit | commitdiff | tree | snapshot |
| 2009-02-26 |
Diane Trout | Remove a few more fields that we dont use, and change... |
commit | commitdiff | tree | snapshot |
| 2009-02-24 |
Diane Trout | simplify library admin index view |
commit | commitdiff | tree | snapshot |
| 2009-02-17 |
Diane Trout | Add script to convert current caltech v0.1.x database... |
commit | commitdiff | tree | snapshot |
| 2009-02-17 |
Diane Trout | Merge flowcell 'paired_end' flag from v0.1 branch |
commit | commitdiff | tree | snapshot |
| 2009-02-17 |
Diane Trout | remove cfg_defaults. It was part of an idea I was start... |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | Reverse a mistake. DataRuns is from Rami and should... |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | enable sort of library view by descending library_id |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | save longer comment describing change |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | Aparently some more recent version of multi eland stopped |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | Merge in the library list, detail, and results download... |
commit | commitdiff | tree | snapshot |
| 2009-02-13 |
Diane Trout | use the compression handling auto-opener for our eland... |
commit | commitdiff | tree | snapshot |
| 2009-02-12 |
Diane Trout | make our API docstrings more epydoc friendly |
commit | commitdiff | tree | snapshot |
| 2009-02-12 |
Diane Trout | Add load_pipeline_run_xml, a little function that feeds... |
commit | commitdiff | tree | snapshot |
| 2009-02-05 |
Diane Trout | Drop 'using %s as cwd' down to just debug level. |
commit | commitdiff | tree | snapshot |
| 2009-01-30 |
Diane Trout | extended command line configuration parsing and add... |
commit | commitdiff | tree | snapshot |
| 2009-01-30 |
Diane Trout | Try to make runfolder results extraction more robust |
commit | commitdiff | tree | snapshot |
| 2009-01-30 |
Diane Trout | Update to not hard code the config file name and the... |
commit | commitdiff | tree | snapshot |
| 2009-01-24 |
Diane Trout | insert code to do ~ home directory expansion |
commit | commitdiff | tree | snapshot |
| 2009-01-23 |
Diane Trout | Add in Rami's report template, and adjust the paths... |
commit | commitdiff | tree | snapshot |
| 2009-01-23 |
Diane Trout | Add id as an AutoNumber(primary_key=True) field and... |
commit | commitdiff | tree | snapshot |
| 2009-01-21 |
Diane Trout | Merge in Rami's changes from last friday. |
commit | commitdiff | tree | snapshot |
| 2009-01-14 |
Diane Trout | add some testing code for the runner daemon |
commit | commitdiff | tree | snapshot |
| 2009-01-14 |
Diane Trout | add empty admin.py for eland_config app |
commit | commitdiff | tree | snapshot |
| 2009-01-14 |
Diane Trout | Merged much of the stanford htsworkflow frontend into... |
commit | commitdiff | tree | snapshot |
| 2009-01-08 |
Diane Trout | This is a partial merge of the stanford branch with... |
commit | commitdiff | tree | snapshot |
| 2009-01-06 |
Diane Trout | Look in Temp directories for some of the files we have... |
commit | commitdiff | tree | snapshot |
| 2008-12-24 |
Diane Trout | Handle paired-end eland files. |
commit | commitdiff | tree | snapshot |
| 2008-12-24 |
Diane Trout | remove a debug print statement |
commit | commitdiff | tree | snapshot |
| 2008-12-24 |
Diane Trout | Add test cases for alphanum sort |
commit | commitdiff | tree | snapshot |
| 2008-12-24 |
Diane Trout | Support sorting numbers along with the alphanumeric... |
commit | commitdiff | tree | snapshot |
| 2008-12-23 |
Diane Trout | change from hand coded formatting functions to the... |
commit | commitdiff | tree | snapshot |
| 2008-12-23 |
Diane Trout | Use the right URLError attribute names for error messages |
commit | commitdiff | tree | snapshot |
| 2008-12-22 |
Diane Trout | update make-tree-library script with new default location |
commit | commitdiff | tree | snapshot |
| 2008-12-22 |
Diane Trout | fix the multi-eland parser to strip off extensions... |
commit | commitdiff | tree | snapshot |
| 2008-12-22 |
Diane Trout | clean up the logic for deciding the output filename... |
commit | commitdiff | tree | snapshot |
| 2008-12-19 |
Diane Trout | Add command to report path to make figuring out which... |
commit | commitdiff | tree | snapshot |
| 2008-12-18 |
Diane Trout | rename config file to something that doesn't include... |
commit | commitdiff | tree | snapshot |
| 2008-12-10 |
Diane Trout | The summary parsing code now seems to handle paired... |
commit | commitdiff | tree | snapshot |
| 2008-12-09 |
Diane Trout | Test 1.1rc1 style runs, which unfortunately require... |
commit | commitdiff | tree | snapshot |
| 2008-12-03 |
Diane Trout | make-library-tree is a tool to maintain caltech's versi... |
commit | commitdiff | tree | snapshot |
| 2008-12-03 |
Diane Trout | Add test code to see if runfolder can handle something... |
commit | commitdiff | tree | snapshot |
| 2008-12-03 |
Diane Trout | Add code to create a paired end Summary.htm file |
commit | commitdiff | tree | snapshot |
| 2008-12-03 |
Diane Trout | Store the bustard pathname when searching for run folders |
commit | commitdiff | tree | snapshot |
| 2008-11-21 |
Diane Trout | Use the get_runs from htsworkflow.pipelines.runfolder |
commit | commitdiff | tree | snapshot |
| 2008-11-14 |
Diane Trout | Forgot to change a import htsworkflow.pipeline to htswo... |
commit | commitdiff | tree | snapshot |
| 2008-11-06 |
Diane Trout | Updated ipar_100 test case to deal with the using U0... |
commit | commitdiff | tree | snapshot |
| 2008-11-06 |
Diane Trout | Process eland extended (or multi) read files. |
commit | commitdiff | tree | snapshot |
| 2008-10-30 |
Diane Trout | The htsworkflow.pipelines.gerald module was getting... |
commit | commitdiff | tree | snapshot |
| 2008-10-30 |
Diane Trout | Add support for scanning for results in the IPAR directory. |
commit | commitdiff | tree | snapshot |
| 2008-10-30 |
Diane Trout | Add "_slow" to the end of the queuecommand test functions |
commit | commitdiff | tree | snapshot |
| 2008-10-28 |
Diane Trout | update setup.py for some package renames and some missi... |
commit | commitdiff | tree | snapshot |
| 2008-10-21 |
Diane Trout | Merge in new modules from htsworkflow branch. |
commit | commitdiff | tree | snapshot |
| 2008-10-21 |
Diane Trout | Merge in model changes to fctracker from htsworkflow... |
commit | commitdiff | tree | snapshot |
| 2008-10-21 |
Diane Trout | update scripts for the pipeline to pipelines module... |
commit | commitdiff | tree | snapshot |
| 2008-10-15 |
Diane Trout | rename pipeline to pipelines to imply that we can proce... |
commit | commitdiff | tree | snapshot |
| 2008-10-15 |
Diane Trout | Rename trunk from gaworkflow to htsworkflow (and update... |
commit | commitdiff | tree | snapshot |
| 2008-09-25 |
Diane Trout | solexa2srf likes to produce output, so my trick of... |
commit | commitdiff | tree | snapshot |
| 2008-09-25 |
Diane Trout | use _ for field seperator in srf file names. (Using... |
commit | commitdiff | tree | snapshot |
| next |
projects / htsworkflow.git / shortlog