woldlab.caltech.edu Git - mussa.git/search

2006-07-28	Diane Trout	Implement a convienence class for accessing python...	commit \| commitdiff \| tree
2006-07-27	Diane Trout	rename glseq.width to glseq.size in gl.py	commit \| commitdiff \| tree
2006-07-27	Diane Trout	update gl.py to show how to add an annotation	commit \| commitdiff \| tree
2006-07-27	Diane Trout	add annot and motif classes to python interface	commit \| commitdiff \| tree
2006-07-27	Diane Trout	update gl.py glut example code	commit \| commitdiff \| tree
2006-07-27	Diane Trout	use QT_QTASSISTANT_FOUND when detecting QtAssistant	commit \| commitdiff \| tree
2006-07-27	Diane Trout	fix problems instantiating mussa.GlSequence	commit \| commitdiff \| tree
2006-07-27	Diane Trout	make it possible to build mussa with python	commit \| commitdiff \| tree
2006-07-26	Diane Trout	Use BOOST_PYTHON_LIBRARY as python library guard	commit \| commitdiff \| tree
2006-07-22	Diane Trout	universal ld wrapper script	commit \| commitdiff \| tree
2006-07-21	Diane Trout	Build universal binaries on OS X	commit \| commitdiff \| tree
2006-07-15	Diane Trout	Provide an app icon on OS X	commit \| commitdiff \| tree
2006-07-15	Diane Trout	include images used for bioinformatics journal club...	commit \| commitdiff \| tree
2006-07-13	Diane Trout	start the trivial sequence filter	commit \| commitdiff \| tree
2006-07-11	Diane Trout	ignore another build name	commit \| commitdiff \| tree
2006-07-11	Diane Trout	update os x building tools	commit \| commitdiff \| tree
2006-07-11	Diane Trout	Test for RST2HTML and BOOST_PYTHON_LIB	commit \| commitdiff \| tree
2006-07-11	Diane Trout	fix spelling error	commit \| commitdiff \| tree
2006-07-10	Diane Trout	Presentation for bioinformatics club.	commit \| commitdiff \| tree
2006-07-08	Diane Trout	start of presentation for bioinformatics journal club...	commit \| commitdiff \| tree
2006-07-06	Diane Trout	Empty Subanalyses should not be run	commit \| commitdiff \| tree
2006-07-06	Diane Trout	Write cmake scripts for building the html manual	commit \| commitdiff \| tree
2006-07-05	Diane Trout	SequenceLocationModel::clear should actually clear...	commit \| commitdiff \| tree
2006-07-05	Diane Trout	remove MotifDetail:: from function in class declaration	commit \| commitdiff \| tree
2006-07-01	Diane Trout	SequenceLocation was being intialized with left,right	commit \| commitdiff \| tree
2006-07-01	Diane Trout	make sure subsequences have a species name	commit \| commitdiff \| tree
2006-07-01	Diane Trout	make subanalysis window editable	commit \| commitdiff \| tree
2006-07-01	Diane Trout	Implement UI for subanalysis mode	commit \| commitdiff \| tree
2006-06-30	Diane Trout	fix boost::python sequence interface	commit \| commitdiff \| tree
2006-06-30	Diane Trout	store motifs as sequences instead of strings	commit \| commitdiff \| tree
2006-06-30	Diane Trout	Allow disabling motifs	commit \| commitdiff \| tree
2006-06-30	Diane Trout	move edit motifs to the edit menu option	commit \| commitdiff \| tree
2006-06-29	Diane Trout	set_motifs should erase the previous motifs	commit \| commitdiff \| tree
2006-06-29	Diane Trout	allow specifying a name for a sequence	commit \| commitdiff \| tree
2006-06-29	Diane Trout	update the annotation grammer to make species name...	commit \| commitdiff \| tree
2006-06-29	Diane Trout	view sequence alignment is a more biologically useful...	commit \| commitdiff \| tree
2006-06-29	Diane Trout	break the core of add_motifs loop into a seperate function	commit \| commitdiff \| tree
2006-06-29	Diane Trout	Allow setting a name for a motif	commit \| commitdiff \| tree
2006-06-26	Diane Trout	Tailorization	commit \| commitdiff \| tree
2006-06-23	Diane Trout	Getting closer to a subanalysis mode	commit \| commitdiff \| tree
2006-06-21	Diane Trout	More progress toward subanalysis	commit \| commitdiff \| tree
2006-06-21	Diane Trout	use a specific exception when nextTo breaks	commit \| commitdiff \| tree
2006-06-20	Diane Trout	extend annotation names and types to allow punctuation	commit \| commitdiff \| tree
2006-06-17	Diane Trout	add view alignment to the sequence browser context...	commit \| commitdiff \| tree
2006-06-17	Diane Trout	make Sequence a subclass of std::string	commit \| commitdiff \| tree
2006-06-16	Diane Trout	remove unnecessary class decoration	commit \| commitdiff \| tree
2006-06-16	Diane Trout	ticket:104 fix some pointer problems with MussaAlignedWindow	commit \| commitdiff \| tree
2006-06-15	Diane Trout	share one instance of the copySelectedSequenceAsFastaAction	commit \| commitdiff \| tree
2006-06-15	Diane Trout	Disabled code to try and get bundle path on OS X	commit \| commitdiff \| tree
2006-06-15	Diane Trout	Tell CMake not to include QtAssistant if not available	commit \| commitdiff \| tree
2006-06-15	Diane Trout	be more informative when DISPLAY isn't set under unix	commit \| commitdiff \| tree
2006-06-15	Diane Trout	try to make including QtAssistant optional	commit \| commitdiff \| tree
2006-06-15	Diane Trout	don't bother to build the old fltk code base	commit \| commitdiff \| tree
2006-06-14	Diane Trout	AMD64 build support	commit \| commitdiff \| tree
2006-06-14	Diane Trout	Make cmake happier about my target declariation order	commit \| commitdiff \| tree
2006-06-14	Diane Trout	implement selection context menu	commit \| commitdiff \| tree
2006-06-14	Diane Trout	reformat some braces	commit \| commitdiff \| tree
2006-06-13	Diane Trout	include the sequence coordinates when copying sequence	commit \| commitdiff \| tree
2006-06-13	Diane Trout	SequenceBrowser should handle the copying	commit \| commitdiff \| tree
2006-06-12	Diane Trout	remove a useless debugging message	commit \| commitdiff \| tree
2006-06-12	Diane Trout	Actually copy our selected sequence to the clipboard	commit \| commitdiff \| tree
2006-06-10	Diane Trout	partial implementation of sequence track copy	commit \| commitdiff \| tree
2006-06-09	Diane Trout	More robust eol handling for Sequence::load_fasta	commit \| commitdiff \| tree
2006-06-08	Diane Trout	improve fasta parsing	commit \| commitdiff \| tree
2006-06-08	Diane Trout	minor ui label tweaks	commit \| commitdiff \| tree
2006-06-08	Diane Trout	minor improvements to python embedding code	commit \| commitdiff \| tree
2006-06-08	Diane Trout	Report error when sequence couldn't be loaded	commit \| commitdiff \| tree
2006-06-08	Diane Trout	Turn on more doxygen features	commit \| commitdiff \| tree
2006-06-06	Diane Trout	keep track of how far through a seqcomp we've gotten	commit \| commitdiff \| tree
2006-06-03	Diane Trout	use Qt Signals & Slots for progress tracking	commit \| commitdiff \| tree
2006-05-27	Diane Trout	add callback for tracking analysis progress	commit \| commitdiff \| tree
2006-05-27	Diane Trout	rename [gset_soft_thres to [gs]et_soft_threshold]	commit \| commitdiff \| tree
2006-05-27	Diane Trout	configure cmake to include support for QtAssistant	commit \| commitdiff \| tree
2006-05-25	Diane Trout	let the keyboard reasonably control the browser window	commit \| commitdiff \| tree
2006-05-25	Diane Trout	add some documentation for glseqbrowser::viewport*	commit \| commitdiff \| tree
2006-05-25	Diane Trout	combine a declaration and assignment	commit \| commitdiff \| tree
2006-05-24	Diane Trout	set all the QAction pointers to 0	commit \| commitdiff \| tree
2006-05-23	Diane Trout	rename ExtendedConservedPath for the old fltk code	commit \| commitdiff \| tree
2006-05-22	Diane Trout	we should be defaulting to qt 4.1.2	commit \| commitdiff \| tree
2006-05-22	Diane Trout	make linking python optional	commit \| commitdiff \| tree
2006-05-20	Diane Trout	turn color back on	commit \| commitdiff \| tree
2006-05-20	Diane Trout	ticket:62 fix local alignment	commit \| commitdiff \| tree
2006-05-20	Diane Trout	specify what version of cmake is required	commit \| commitdiff \| tree
2006-05-18	Diane Trout	rename the python extension to _mussa.so	commit \| commitdiff \| tree
2006-05-18	Diane Trout	expose more of the sequence class to python	commit \| commitdiff \| tree
2006-05-17	Diane Trout	finish implementing annotation by sequence	commit \| commitdiff \| tree
2006-05-17	Diane Trout	switch to a character based spirit parser	commit \| commitdiff \| tree
2006-05-17	Diane Trout	try to read fasta blocks in the annotation file	commit \| commitdiff \| tree
2006-05-17	Diane Trout	use spirit parser for reading annot file	commit \| commitdiff \| tree
2006-05-16	Diane Trout	add annotations by sequence string	commit \| commitdiff \| tree
2006-05-11	Diane Trout	try to make setup.py multiplatform	commit \| commitdiff \| tree
2006-05-11	Diane Trout	minor tweaks for building mussa under setup.py	commit \| commitdiff \| tree
2006-05-11	Diane Trout	super simple mussa gui driver	commit \| commitdiff \| tree
2006-05-11	Diane Trout	build all of mussagl as a python extension	commit \| commitdiff \| tree
2006-05-10	Diane Trout	lets try letting python build mussa	commit \| commitdiff \| tree
2006-05-10	Diane Trout	increase the use of python in mussa	commit \| commitdiff \| tree
2006-05-04	Diane Trout	allow saving aligned window browser to image	commit \| commitdiff \| tree
2006-05-04	Diane Trout	show the name of the analysis loaded	commit \| commitdiff \| tree
2006-05-04	Diane Trout	allow opening multiple MussaWindows	commit \| commitdiff \| tree
2006-04-19	Diane Trout	win32 paths need some conversion	commit \| commitdiff \| tree
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MUSSA multi-species alignment tool

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