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Empty Subanalyses should not be run
2006-07-06 Diane TroutEmpty Subanalyses should not be run
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2006-07-06 Diane TroutWrite cmake scripts for building the html manual
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2006-07-05 Diane TroutSequenceLocationModel::clear should actually clear...
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2006-07-05 Diane Troutremove MotifDetail:: from function in class declaration
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2006-07-01 Diane TroutSequenceLocation was being intialized with left,right
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2006-07-01 Diane Troutmake sure subsequences have a species name
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2006-07-01 Diane Troutmake subanalysis window editable
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2006-07-01 Diane TroutImplement UI for subanalysis mode
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2006-06-30 Diane Troutfix boost::python sequence interface
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2006-06-30 Diane Troutstore motifs as sequences instead of strings
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2006-06-30 Diane TroutAllow disabling motifs
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2006-06-30 Diane Troutmove edit motifs to the edit menu option
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2006-06-29 Diane Troutset_motifs should erase the previous motifs
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2006-06-29 Diane Troutallow specifying a name for a sequence
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2006-06-29 Diane Troutupdate the annotation grammer to make species name...
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2006-06-29 Diane Troutview sequence alignment is a more biologically useful...
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2006-06-29 Diane Troutbreak the core of add_motifs loop into a seperate function
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2006-06-29 Diane TroutAllow setting a name for a motif
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2006-06-26 Diane TroutTailorization
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2006-06-23 Diane TroutGetting closer to a subanalysis mode
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2006-06-21 Diane TroutMore progress toward subanalysis
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2006-06-21 Diane Troutuse a specific exception when nextTo breaks
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2006-06-20 Diane Troutextend annotation names and types to allow punctuation
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2006-06-17 Diane Troutadd view alignment to the sequence browser context...
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2006-06-17 Diane Troutmake Sequence a subclass of std::string
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2006-06-16 Diane Troutremove unnecessary class decoration
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2006-06-16 Diane Troutticket:104 fix some pointer problems with MussaAlignedWindow
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2006-06-15 Diane Troutshare one instance of the copySelectedSequenceAsFastaAction
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2006-06-15 Diane TroutDisabled code to try and get bundle path on OS X
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2006-06-15 Diane TroutTell CMake not to include QtAssistant if not available
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2006-06-15 Diane Troutbe more informative when DISPLAY isn't set under unix
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2006-06-15 Diane Trouttry to make including QtAssistant optional
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2006-06-15 Diane Troutdon't bother to build the old fltk code base
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2006-06-14 Diane TroutAMD64 build support
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2006-06-14 Diane TroutMake cmake happier about my target declariation order
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2006-06-14 Diane Troutimplement selection context menu
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2006-06-14 Diane Troutreformat some braces
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2006-06-13 Diane Troutinclude the sequence coordinates when copying sequence
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2006-06-13 Diane TroutSequenceBrowser should handle the copying
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2006-06-12 Diane Troutremove a useless debugging message
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2006-06-12 Diane TroutActually copy our selected sequence to the clipboard
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2006-06-10 Diane Troutpartial implementation of sequence track copy
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2006-06-09 Diane TroutMore robust eol handling for Sequence::load_fasta
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2006-06-08 Diane Troutimprove fasta parsing
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2006-06-08 Diane Troutminor ui label tweaks
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2006-06-08 Diane Troutminor improvements to python embedding code
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2006-06-08 Diane TroutReport error when sequence couldn't be loaded
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2006-06-08 Diane TroutTurn on more doxygen features
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2006-06-06 Diane Troutkeep track of how far through a seqcomp we've gotten
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2006-06-03 Diane Troutuse Qt Signals & Slots for progress tracking
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2006-05-27 Diane Troutadd callback for tracking analysis progress
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2006-05-27 Diane Troutrename [gset_soft_thres to [gs]et_soft_threshold]
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2006-05-27 Diane Troutconfigure cmake to include support for QtAssistant
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2006-05-25 Diane Troutlet the keyboard reasonably control the browser window
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2006-05-25 Diane Troutadd some documentation for glseqbrowser::viewport*
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2006-05-25 Diane Troutcombine a declaration and assignment
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2006-05-24 Diane Troutset all the QAction pointers to 0
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2006-05-23 Diane Troutrename ExtendedConservedPath for the old fltk code
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2006-05-22 Diane Troutwe should be defaulting to qt 4.1.2
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2006-05-22 Diane Troutmake linking python optional
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2006-05-20 Diane Troutturn color back on
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2006-05-20 Diane Troutticket:62 fix local alignment
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2006-05-20 Diane Troutspecify what version of cmake is required
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2006-05-18 Diane Troutrename the python extension to _mussa.so
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2006-05-18 Diane Troutexpose more of the sequence class to python
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2006-05-17 Diane Troutfinish implementing annotation by sequence
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2006-05-17 Diane Troutswitch to a character based spirit parser
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2006-05-17 Diane Trouttry to read fasta blocks in the annotation file
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2006-05-17 Diane Troutuse spirit parser for reading annot file
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2006-05-16 Diane Troutadd annotations by sequence string
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2006-05-11 Diane Trouttry to make setup.py multiplatform
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2006-05-11 Diane Troutminor tweaks for building mussa under setup.py
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2006-05-11 Diane Troutsuper simple mussa gui driver
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2006-05-11 Diane Troutbuild all of mussagl as a python extension
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2006-05-10 Diane Troutlets try letting python build mussa
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2006-05-10 Diane Troutincrease the use of python in mussa
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2006-05-04 Diane Troutallow saving aligned window browser to image
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2006-05-04 Diane Troutshow the name of the analysis loaded
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2006-05-04 Diane Troutallow opening multiple MussaWindows
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2006-04-19 Diane Troutwin32 paths need some conversion
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2006-04-18 Diane Trouttry to get mussagl to build on win32
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2006-04-18 Diane Troutimplement commandline arguments for makedmg
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2006-04-13 Diane Troutthe fasta error message should include the filename
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2006-04-13 Diane Troutfix ticket:83 throw an error when we don't have a fasta...
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2006-04-13 Diane Troutcreate an options structure to indicate if we need...
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2006-04-12 Diane Troutticket:85 fix, extend code crashes with 1 path
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2006-04-12 Diane Troutuse a custom target for python extension
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2006-04-12 Diane Troutrecord cmake commands to deal with some dependency...
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2006-04-12 Diane Troutdefault to building a debug version
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2006-04-12 Diane Troutput qt gui launching code into a function
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2006-04-12 Diane TroutAMD64 needs -fPIC for mussa_core
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2006-04-12 Diane Troutput spaces instead of <TAB> on gui/module.mk
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2006-04-12 Diane Troutln -s is not that reliable
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2006-04-12 Diane Troutbuild the python interface
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2006-04-11 Diane Troutminor fixes for older buildsystems
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2006-04-08 Diane Troutrename _LIB to _LIBRARY to be more consistent with...
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2006-04-07 Diane Troutbuild fltk version and deal with debian qt4 weirdness
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2006-04-07 Diane Troutmake include gl.h multiplatform
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2006-04-07 Diane Troutswitch to using boost::filesystem
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2006-04-07 Diane Troutput build environment support tools in makelib
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MUSSA multi-species alignment tool