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2006-09-18	Diane Trout	Remember to include Platform to get PYTHON_LINK_LIBARIES	commit \| commitdiff \| tree
2006-09-18	Diane Trout	ask python what libraries we need to link with	commit \| commitdiff \| tree
2006-09-16	Diane Trout	Load saved analysis can open new windows	commit \| commitdiff \| tree
2006-09-15	Diane Trout	if you need to do a save as, you really don't need...	commit \| commitdiff \| tree
2006-09-15	Diane Trout	remember the last directory we were did something in	commit \| commitdiff \| tree
2006-09-15	Diane Trout	remove reporting the current path from the about box	commit \| commitdiff \| tree
2006-09-15	Diane Trout	use the loaded analysis path as the default save path	commit \| commitdiff \| tree
2006-09-15	Diane Trout	always save	commit \| commitdiff \| tree
2006-09-15	Diane Trout	keep track of a subsequences parent	commit \| commitdiff \| tree
2006-09-15	Diane Trout	report our "start/stop" location on a subsequence	commit \| commitdiff \| tree
2006-09-15	Diane Trout	use an enum instead of a bool for strandedness	commit \| commitdiff \| tree
2006-09-15	Diane Trout	make our Color class serializable	commit \| commitdiff \| tree
2006-09-14	Diane Trout	do a better job of erasing the browser sidebars	commit \| commitdiff \| tree
2006-09-14	Diane Trout	make sure we show the start of our sequence name	commit \| commitdiff \| tree
2006-09-14	Diane Trout	Implement an optional name in the motif parser	commit \| commitdiff \| tree
2006-09-13	Diane Trout	MussaSetupDialog remembers previous load directory	commit \| commitdiff \| tree
2006-09-13	Diane Trout	default saveAnalysisAs to users home directory	commit \| commitdiff \| tree
2006-09-12	Diane Trout	warn the user if we're going to replace an analysis	commit \| commitdiff \| tree
2006-09-12	Diane Trout	implement "typical" save and close conventions.	commit \| commitdiff \| tree
2006-09-12	Diane Trout	track where our analysis is saved and if the analysis...	commit \| commitdiff \| tree
2006-09-12	Diane Trout	implement analysis save as dialog	commit \| commitdiff \| tree
2006-09-12	Diane Trout	add seq_forward	commit \| commitdiff \| tree
2006-09-09	Diane Trout	make really sure load_mupa has a file to parse.	commit \| commitdiff \| tree
2006-09-08	Diane Trout	subsequences now use offsets into the shared_ptr seq_string	commit \| commitdiff \| tree
2006-09-08	Diane Trout	catch a few more potential unchecked shared_ptr dereferences.	commit \| commitdiff \| tree
2006-09-07	Diane Trout	remove commented out string conversion	commit \| commitdiff \| tree
2006-09-07	Diane Trout	Figured out how to serialize a shared_ptr<string>	commit \| commitdiff \| tree
2006-09-07	Diane Trout	go back to using const char * in seqcomp	commit \| commitdiff \| tree
2006-08-30	Diane Trout	use shared_ptr to store the sequence string	commit \| commitdiff \| tree
2006-08-29	Diane Trout	put basepair alphabets into the Sequence class	commit \| commitdiff \| tree
2006-08-29	Diane Trout	go back to sequence being its own class	commit \| commitdiff \| tree
2006-08-31	Diane Trout	There's something wrong with the Qt tests, skip for...	commit \| commitdiff \| tree
2006-08-31	Diane Trout	fedora needs -lutil for python to build	commit \| commitdiff \| tree
2006-08-31	Diane Trout	need to #include <cassert> if i'm going to use asserts	commit \| commitdiff \| tree
2006-08-29	Diane Trout	forgot namespace declaration on some conditional code	commit \| commitdiff \| tree
2006-08-24	Diane Trout	start trying to figure out where the documentation is	commit \| commitdiff \| tree
2006-08-24	Diane Trout	update sequence serialization to support the xml archive	commit \| commitdiff \| tree
2006-08-23	Diane Trout	Allow changing the name for a sequence in the sequence...	commit \| commitdiff \| tree
2006-08-22	Diane Trout	catch the other spurious class decoration	commit \| commitdiff \| tree
2006-08-22	Diane Trout	remove unnecessary class member decoration	commit \| commitdiff \| tree
2006-08-12	Diane Trout	Fix merge issues with the win32 library patch	commit \| commitdiff \| tree
2006-08-11	Diane Trout	Update SequenceDescription to have signal/slots	commit \| commitdiff \| tree
2006-08-11	Diane Trout	do a better job of grouping seqbrowser sidebar information.	commit \| commitdiff \| tree
2006-08-10	Diane Trout	Try alpha blending the conservation paths	commit \| commitdiff \| tree
2006-08-10	Diane Trout	remove the useless hide motif button.	commit \| commitdiff \| tree
2006-08-10	Diane Trout	Let the annotation parser skip html tags	commit \| commitdiff \| tree
2006-08-09	Diane Trout	Implement serialize for sequence	commit \| commitdiff \| tree
2006-08-09	Diane Trout	start breaking save out from Mussa::analyze()	commit \| commitdiff \| tree
2006-08-09	Diane Trout	Add documentation about Mussa::soft_threshold	commit \| commitdiff \| tree
2006-08-09	Diane Trout	remove mck3test.museq and .muway	commit \| commitdiff \| tree
2006-08-09	Diane Trout	Add serialization library to FindBoost	commit \| commitdiff \| tree
2006-08-09	Diane Trout	add dirty flag	commit \| commitdiff \| tree
2006-08-09	Diane Trout	change from cout to clog in some commented out debugging...	commit \| commitdiff \| tree
2006-07-29	Diane Trout	set mussa analysis name in MussaSetupWidget	commit \| commitdiff \| tree
2006-07-28	Diane Trout	update osxdist to point to qt 4.1.4	commit \| commitdiff \| tree
2006-07-28	Diane Trout	fix ticket:115 display sequences in order added	commit \| commitdiff \| tree
2006-07-28	Diane Trout	Use CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR	commit \| commitdiff \| tree
2006-07-28	Diane Trout	Since building with cmake 2.2 didn't work up the required...	commit \| commitdiff \| tree
2006-07-28	Diane Trout	set current doc url	commit \| commitdiff \| tree
2006-07-28	Diane Trout	Implement a convienence class for accessing python...	commit \| commitdiff \| tree
2006-07-27	Diane Trout	rename glseq.width to glseq.size in gl.py	commit \| commitdiff \| tree
2006-07-27	Diane Trout	update gl.py to show how to add an annotation	commit \| commitdiff \| tree
2006-07-27	Diane Trout	add annot and motif classes to python interface	commit \| commitdiff \| tree
2006-07-27	Diane Trout	update gl.py glut example code	commit \| commitdiff \| tree
2006-07-27	Diane Trout	use QT_QTASSISTANT_FOUND when detecting QtAssistant	commit \| commitdiff \| tree
2006-07-27	Diane Trout	fix problems instantiating mussa.GlSequence	commit \| commitdiff \| tree
2006-07-27	Diane Trout	make it possible to build mussa with python	commit \| commitdiff \| tree
2006-07-26	Diane Trout	Use BOOST_PYTHON_LIBRARY as python library guard	commit \| commitdiff \| tree
2006-07-22	Diane Trout	universal ld wrapper script	commit \| commitdiff \| tree
2006-07-21	Diane Trout	Build universal binaries on OS X	commit \| commitdiff \| tree
2006-07-15	Diane Trout	Provide an app icon on OS X	commit \| commitdiff \| tree
2006-07-15	Diane Trout	include images used for bioinformatics journal club...	commit \| commitdiff \| tree
2006-07-13	Diane Trout	start the trivial sequence filter	commit \| commitdiff \| tree
2006-07-11	Diane Trout	ignore another build name	commit \| commitdiff \| tree
2006-07-11	Diane Trout	update os x building tools	commit \| commitdiff \| tree
2006-07-11	Diane Trout	Test for RST2HTML and BOOST_PYTHON_LIB	commit \| commitdiff \| tree
2006-07-11	Diane Trout	fix spelling error	commit \| commitdiff \| tree
2006-07-10	Diane Trout	Presentation for bioinformatics club.	commit \| commitdiff \| tree
2006-07-08	Diane Trout	start of presentation for bioinformatics journal club...	commit \| commitdiff \| tree
2006-07-06	Diane Trout	Empty Subanalyses should not be run	commit \| commitdiff \| tree
2006-07-06	Diane Trout	Write cmake scripts for building the html manual	commit \| commitdiff \| tree
2006-07-05	Diane Trout	SequenceLocationModel::clear should actually clear...	commit \| commitdiff \| tree
2006-07-05	Diane Trout	remove MotifDetail:: from function in class declaration	commit \| commitdiff \| tree
2006-07-01	Diane Trout	SequenceLocation was being intialized with left,right	commit \| commitdiff \| tree
2006-07-01	Diane Trout	make sure subsequences have a species name	commit \| commitdiff \| tree
2006-07-01	Diane Trout	make subanalysis window editable	commit \| commitdiff \| tree
2006-07-01	Diane Trout	Implement UI for subanalysis mode	commit \| commitdiff \| tree
2006-06-30	Diane Trout	fix boost::python sequence interface	commit \| commitdiff \| tree
2006-06-30	Diane Trout	store motifs as sequences instead of strings	commit \| commitdiff \| tree
2006-06-30	Diane Trout	Allow disabling motifs	commit \| commitdiff \| tree
2006-06-30	Diane Trout	move edit motifs to the edit menu option	commit \| commitdiff \| tree
2006-06-29	Diane Trout	set_motifs should erase the previous motifs	commit \| commitdiff \| tree
2006-06-29	Diane Trout	allow specifying a name for a sequence	commit \| commitdiff \| tree
2006-06-29	Diane Trout	update the annotation grammer to make species name...	commit \| commitdiff \| tree
2006-06-29	Diane Trout	view sequence alignment is a more biologically useful...	commit \| commitdiff \| tree
2006-06-29	Diane Trout	break the core of add_motifs loop into a seperate function	commit \| commitdiff \| tree
2006-06-29	Diane Trout	Allow setting a name for a motif	commit \| commitdiff \| tree
2006-06-26	Diane Trout	Tailorization	commit \| commitdiff \| tree
2006-06-23	Diane Trout	Getting closer to a subanalysis mode	commit \| commitdiff \| tree
2006-06-21	Diane Trout	More progress toward subanalysis	commit \| commitdiff \| tree
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MUSSA multi-species alignment tool

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