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add --motifs
2006-10-04 Diane Troutadd --motifs
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2006-10-04 Diane Trouttrigger motif update from loadMotifList
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2006-10-04 Diane Troutfixes for Mussa::load_motif
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2006-10-04 Diane Troutcolors should default to being visible
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2006-10-03 Diane TroutAdd window titles
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2006-06-15 Diane Troutfix wrong parent for scrollable_browser
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2006-10-03 Diane TroutAdd ReadOnly ThresholdWidget to MussaAlignedWindow
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2006-10-03 Diane TroutUse pointers in ThresholdWidget
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2006-10-03 Diane TroutAllow MussaAlignedWindows to create subanalyses
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2006-10-03 Diane TroutDeath to stupid mussa pointers
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2006-10-02 Diane Troutadd updateTitle
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2006-10-02 Diane TroutMake MussaWindow UI objects pointers
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2006-09-29 Diane Troutbetter motif editor
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2006-09-21 Diane TroutIf we don't need any python link libraries don't produce...
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2006-09-19 Diane Troutcatch possible segfault with get_sequence()
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2006-09-18 Diane Troutneed a cassert
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2006-09-18 Diane TroutRemember to include Platform to get PYTHON_LINK_LIBARIES
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2006-09-18 Diane Troutask python what libraries we need to link with
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2006-09-16 Diane TroutLoad saved analysis can open new windows
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2006-09-15 Diane Troutif you need to do a save as, you really don't need...
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2006-09-15 Diane Troutremember the last directory we were did something in
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2006-09-15 Diane Troutremove reporting the current path from the about box
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2006-09-15 Diane Troutuse the loaded analysis path as the default save path
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2006-09-15 Diane Troutalways save
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2006-09-15 Diane Troutkeep track of a subsequences parent
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2006-09-15 Diane Troutreport our "start/stop" location on a subsequence
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2006-09-15 Diane Troutuse an enum instead of a bool for strandedness
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2006-09-15 Diane Troutmake our Color class serializable
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2006-09-14 Diane Troutdo a better job of erasing the browser sidebars
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2006-09-14 Diane Troutmake sure we show the start of our sequence name
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2006-09-14 Diane TroutImplement an optional name in the motif parser
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2006-09-13 Diane TroutMussaSetupDialog remembers previous load directory
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2006-09-13 Diane Troutdefault saveAnalysisAs to users home directory
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2006-09-12 Diane Troutwarn the user if we're going to replace an analysis
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2006-09-12 Diane Troutimplement "typical" save and close conventions.
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2006-09-12 Diane Trouttrack where our analysis is saved and if the analysis...
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2006-09-12 Diane Troutimplement analysis save as dialog
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2006-09-12 Diane Troutadd seq_forward
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2006-09-09 Diane Troutmake really sure load_mupa has a file to parse.
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2006-09-08 Diane Troutsubsequences now use offsets into the shared_ptr seq_string
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2006-09-08 Diane Troutcatch a few more potential unchecked shared_ptr dereferences.
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2006-09-07 Diane Troutremove commented out string conversion
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2006-09-07 Diane TroutFigured out how to serialize a shared_ptr<string>
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2006-09-07 Diane Troutgo back to using const char * in seqcomp
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2006-08-30 Diane Troutuse shared_ptr to store the sequence string
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2006-08-29 Diane Troutput basepair alphabets into the Sequence class
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2006-08-29 Diane Troutgo back to sequence being its own class
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2006-08-31 Diane TroutThere's something wrong with the Qt tests, skip for...
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2006-08-31 Diane Troutfedora needs -lutil for python to build
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2006-08-31 Diane Troutneed to #include <cassert> if i'm going to use asserts
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2006-08-29 Diane Troutforgot namespace declaration on some conditional code
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2006-08-24 Diane Troutstart trying to figure out where the documentation is
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2006-08-24 Diane Troutupdate sequence serialization to support the xml archive
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2006-08-23 Diane TroutAllow changing the name for a sequence in the sequence...
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2006-08-22 Diane Troutcatch the other spurious class decoration
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2006-08-22 Diane Troutremove unnecessary class member decoration
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2006-08-12 Diane TroutFix merge issues with the win32 library patch
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2006-08-11 Diane TroutUpdate SequenceDescription to have signal/slots
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2006-08-11 Diane Troutdo a better job of grouping seqbrowser sidebar information.
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2006-08-10 Diane TroutTry alpha blending the conservation paths
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2006-08-10 Diane Troutremove the useless hide motif button.
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2006-08-10 Diane TroutLet the annotation parser skip html tags
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2006-08-09 Diane TroutImplement serialize for sequence
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2006-08-09 Diane Troutstart breaking save out from Mussa::analyze()
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2006-08-09 Diane TroutAdd documentation about Mussa::soft_threshold
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2006-08-09 Diane Troutremove mck3test.museq and .muway
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2006-08-09 Diane TroutAdd serialization library to FindBoost
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2006-08-09 Diane Troutadd dirty flag
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2006-08-09 Diane Troutchange from cout to clog in some commented out debugging...
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2006-07-29 Diane Troutset mussa analysis name in MussaSetupWidget
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2006-07-28 Diane Troutupdate osxdist to point to qt 4.1.4
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2006-07-28 Diane Troutfix ticket:115 display sequences in order added
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2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR
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2006-07-28 Diane TroutSince building with cmake 2.2 didn't work up the required...
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2006-07-28 Diane Troutset current doc url
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2006-07-28 Diane TroutImplement a convienence class for accessing python...
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2006-07-27 Diane Troutrename glseq.width to glseq.size in gl.py
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2006-07-27 Diane Troutupdate gl.py to show how to add an annotation
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2006-07-27 Diane Troutadd annot and motif classes to python interface
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2006-07-27 Diane Troutupdate gl.py glut example code
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2006-07-27 Diane Troutuse QT_QTASSISTANT_FOUND when detecting QtAssistant
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2006-07-27 Diane Troutfix problems instantiating mussa.GlSequence
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2006-07-27 Diane Troutmake it possible to build mussa with python
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2006-07-26 Diane TroutUse BOOST_PYTHON_LIBRARY as python library guard
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2006-07-22 Diane Troutuniversal ld wrapper script
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2006-07-21 Diane TroutBuild universal binaries on OS X
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2006-07-15 Diane TroutProvide an app icon on OS X
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2006-07-15 Diane Troutinclude images used for bioinformatics journal club...
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2006-07-13 Diane Troutstart the trivial sequence filter
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2006-07-11 Diane Troutignore another build name
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2006-07-11 Diane Troutupdate os x building tools
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2006-07-11 Diane TroutTest for RST2HTML and BOOST_PYTHON_LIB
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2006-07-11 Diane Troutfix spelling error
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2006-07-10 Diane TroutPresentation for bioinformatics club.
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2006-07-08 Diane Troutstart of presentation for bioinformatics journal club...
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2006-07-06 Diane TroutEmpty Subanalyses should not be run
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2006-07-06 Diane TroutWrite cmake scripts for building the html manual
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2006-07-05 Diane TroutSequenceLocationModel::clear should actually clear...
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2006-07-05 Diane Troutremove MotifDetail:: from function in class declaration
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2006-07-01 Diane TroutSequenceLocation was being intialized with left,right
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MUSSA multi-species alignment tool