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change from cout to clog in some commented out debugging messages.
2006-08-09 Diane Troutchange from cout to clog in some commented out debugging...
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2006-07-29 Diane Troutset mussa analysis name in MussaSetupWidget
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2006-07-28 Diane Troutupdate osxdist to point to qt 4.1.4
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2006-07-28 Diane Troutfix ticket:115 display sequences in order added
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2006-07-28 Diane TroutUse CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR
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2006-07-28 Diane TroutSince building with cmake 2.2 didn't work up the required...
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2006-07-28 Diane Troutset current doc url
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2006-07-28 Diane TroutImplement a convienence class for accessing python...
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2006-07-27 Diane Troutrename glseq.width to glseq.size in gl.py
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2006-07-27 Diane Troutupdate gl.py to show how to add an annotation
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2006-07-27 Diane Troutadd annot and motif classes to python interface
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2006-07-27 Diane Troutupdate gl.py glut example code
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2006-07-27 Diane Troutuse QT_QTASSISTANT_FOUND when detecting QtAssistant
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2006-07-27 Diane Troutfix problems instantiating mussa.GlSequence
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2006-07-27 Diane Troutmake it possible to build mussa with python
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2006-07-26 Diane TroutUse BOOST_PYTHON_LIBRARY as python library guard
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2006-07-22 Diane Troutuniversal ld wrapper script
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2006-07-21 Diane TroutBuild universal binaries on OS X
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2006-07-15 Diane TroutProvide an app icon on OS X
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2006-07-15 Diane Troutinclude images used for bioinformatics journal club...
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2006-07-13 Diane Troutstart the trivial sequence filter
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2006-07-11 Diane Troutignore another build name
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2006-07-11 Diane Troutupdate os x building tools
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2006-07-11 Diane TroutTest for RST2HTML and BOOST_PYTHON_LIB
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2006-07-11 Diane Troutfix spelling error
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2006-07-10 Diane TroutPresentation for bioinformatics club.
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2006-07-08 Diane Troutstart of presentation for bioinformatics journal club...
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2006-07-06 Diane TroutEmpty Subanalyses should not be run
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2006-07-06 Diane TroutWrite cmake scripts for building the html manual
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2006-07-05 Diane TroutSequenceLocationModel::clear should actually clear...
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2006-07-05 Diane Troutremove MotifDetail:: from function in class declaration
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2006-07-01 Diane TroutSequenceLocation was being intialized with left,right
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2006-07-01 Diane Troutmake sure subsequences have a species name
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2006-07-01 Diane Troutmake subanalysis window editable
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2006-07-01 Diane TroutImplement UI for subanalysis mode
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2006-06-30 Diane Troutfix boost::python sequence interface
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2006-06-30 Diane Troutstore motifs as sequences instead of strings
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2006-06-30 Diane TroutAllow disabling motifs
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2006-06-30 Diane Troutmove edit motifs to the edit menu option
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2006-06-29 Diane Troutset_motifs should erase the previous motifs
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2006-06-29 Diane Troutallow specifying a name for a sequence
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2006-06-29 Diane Troutupdate the annotation grammer to make species name...
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2006-06-29 Diane Troutview sequence alignment is a more biologically useful...
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2006-06-29 Diane Troutbreak the core of add_motifs loop into a seperate function
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2006-06-29 Diane TroutAllow setting a name for a motif
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2006-06-26 Diane TroutTailorization
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2006-06-23 Diane TroutGetting closer to a subanalysis mode
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2006-06-21 Diane TroutMore progress toward subanalysis
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2006-06-21 Diane Troutuse a specific exception when nextTo breaks
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2006-06-20 Diane Troutextend annotation names and types to allow punctuation
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2006-06-17 Diane Troutadd view alignment to the sequence browser context...
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2006-06-17 Diane Troutmake Sequence a subclass of std::string
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2006-06-16 Diane Troutremove unnecessary class decoration
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2006-06-16 Diane Troutticket:104 fix some pointer problems with MussaAlignedWindow
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2006-06-15 Diane Troutshare one instance of the copySelectedSequenceAsFastaAction
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2006-06-15 Diane TroutDisabled code to try and get bundle path on OS X
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2006-06-15 Diane TroutTell CMake not to include QtAssistant if not available
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2006-06-15 Diane Troutbe more informative when DISPLAY isn't set under unix
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2006-06-15 Diane Trouttry to make including QtAssistant optional
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2006-06-15 Diane Troutdon't bother to build the old fltk code base
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2006-06-14 Diane TroutAMD64 build support
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2006-06-14 Diane TroutMake cmake happier about my target declariation order
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2006-06-14 Diane Troutimplement selection context menu
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2006-06-14 Diane Troutreformat some braces
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2006-06-13 Diane Troutinclude the sequence coordinates when copying sequence
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2006-06-13 Diane TroutSequenceBrowser should handle the copying
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2006-06-12 Diane Troutremove a useless debugging message
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2006-06-12 Diane TroutActually copy our selected sequence to the clipboard
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2006-06-10 Diane Troutpartial implementation of sequence track copy
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2006-06-09 Diane TroutMore robust eol handling for Sequence::load_fasta
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2006-06-08 Diane Troutimprove fasta parsing
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2006-06-08 Diane Troutminor ui label tweaks
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2006-06-08 Diane Troutminor improvements to python embedding code
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2006-06-08 Diane TroutReport error when sequence couldn't be loaded
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2006-06-08 Diane TroutTurn on more doxygen features
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2006-06-06 Diane Troutkeep track of how far through a seqcomp we've gotten
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2006-06-03 Diane Troutuse Qt Signals & Slots for progress tracking
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2006-05-27 Diane Troutadd callback for tracking analysis progress
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2006-05-27 Diane Troutrename [gset_soft_thres to [gs]et_soft_threshold]
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2006-05-27 Diane Troutconfigure cmake to include support for QtAssistant
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2006-05-25 Diane Troutlet the keyboard reasonably control the browser window
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2006-05-25 Diane Troutadd some documentation for glseqbrowser::viewport*
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2006-05-25 Diane Troutcombine a declaration and assignment
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2006-05-24 Diane Troutset all the QAction pointers to 0
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2006-05-23 Diane Troutrename ExtendedConservedPath for the old fltk code
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2006-05-22 Diane Troutwe should be defaulting to qt 4.1.2
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2006-05-22 Diane Troutmake linking python optional
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2006-05-20 Diane Troutturn color back on
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2006-05-20 Diane Troutticket:62 fix local alignment
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2006-05-20 Diane Troutspecify what version of cmake is required
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2006-05-18 Diane Troutrename the python extension to _mussa.so
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2006-05-18 Diane Troutexpose more of the sequence class to python
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2006-05-17 Diane Troutfinish implementing annotation by sequence
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2006-05-17 Diane Troutswitch to a character based spirit parser
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2006-05-17 Diane Trouttry to read fasta blocks in the annotation file
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2006-05-17 Diane Troutuse spirit parser for reading annot file
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2006-05-16 Diane Troutadd annotations by sequence string
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2006-05-11 Diane Trouttry to make setup.py multiplatform
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2006-05-11 Diane Troutminor tweaks for building mussa under setup.py
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2006-05-11 Diane Troutsuper simple mussa gui driver
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MUSSA multi-species alignment tool