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Recent IPAR xml config blocks include the runfolder name
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
runfolder.py
2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-07-25
Diane Trout
Actually we want to capture the unanalyzed lanes if...
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2012-07-19
Diane Trout
Update save_raw_data to SampleKey api
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2012-07-16
Diane Trout
Remove default sequence-format so the new auto-detector...
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2012-07-14
Diane Trout
Attempt to guess raw sequence type for a run.
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2012-07-12
Diane Trout
Clean up flowcell ID detection and add support for...
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2012-07-10
Diane Trout
Guess genome name for building compressed mapping count...
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2012-07-05
Diane Trout
Massively rework eland file finding and indexing.
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2012-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-06-30
Diane Trout
Support multiple having an eland file split into multip...
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2012-06-21
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-06-12
Diane Trout
Add a software (name) property to firecrest, ipar,...
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2012-06-11
Diane Trout
Return a gerald version number as a number and not...
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2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-25
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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2012-05-15
Diane Trout
Fix bugs introduduced by the improved HiSeq runfolder...
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2012-05-12
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-05-10
Diane Trout
Minimal changes needed to get raw data archived for...
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2012-04-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-03-27
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2012-03-23
Diane Trout
Apparently I forgot to remove a parameter why creating...
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2012-03-02
Diane Trout
Core functions for saving and finding fastq files gener...
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2011-11-05
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-11-04
Diane Trout
Use a logger initialized to the module name much more...
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2011-10-10
Diane Trout
Remove ReadPrep and Thumbnail_Images being generated...
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2011-10-06
Diane Trout
Add the ability to specify a flowcell id instead of...
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2011-06-30
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-11
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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2011-06-10
Brandon W. King
The srf/qseq --raw-format patch.
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2011-06-09
Diane Trout
Add a method to return the runfolder name.
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2010-09-24
Diane Trout
Handle the case when a sequencing lane lacks any yield...
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2009-12-11
Diane Trout
Modify the srf utility to tar.bz2 the qseq files instea...
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2009-10-08
Diane Trout
Add the ability not to build srf files.
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2009-10-02
Diane Trout
Test the updated version of extract results that builds...
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2009-09-30
Diane Trout
Add building srf files to runfolder as part of --extrac...
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2009-09-10
Diane Trout
Don't crash if there are no lane result summary entries...
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2009-06-17
Diane Trout
Add support for extracting data out of Illumina's new...
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2009-05-05
Diane Trout
Handle lanes that were only sequenced.
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2009-04-24
Diane Trout
add --clean option to runfolder
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2009-03-31
Diane Trout
Use the image directory name to detect what type of...
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2009-03-30
Diane Trout
IPAR detection is more reliable than firecrest so do...
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2009-03-30
Diane Trout
Allow specifying a run instead of just scanning the...
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2009-03-28
Diane Trout
For pipeline 1.1rc1 or 1.3.2, look for the matrix files...
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2009-03-10
Diane Trout
Improve support for eland searching a single fasta...
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2009-02-12
Diane Trout
Add load_pipeline_run_xml, a little function that feeds...
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2009-01-30
Diane Trout
Try to make runfolder results extraction more robust
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2009-01-06
Diane Trout
Look in Temp directories for some of the files we have...
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2008-12-24
Diane Trout
Handle paired-end eland files.
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2008-11-06
Diane Trout
Process eland extended (or multi) read files.
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2008-10-30
Diane Trout
Add support for scanning for results in the IPAR directory.
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2008-10-15
Diane Trout
rename pipeline to pipelines to imply that we can proce...
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