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Implement a client side config file generator.
[htsworkflow.git] / htsworkflow / pipelines /
2009-09-26 Diane TroutImplement a client side config file generator. tree | commitdiff
2009-09-16 Diane TroutReplace some prints with logging.info messages and tree | commitdiff
2009-09-10 Diane TroutDon't crash if there are no lane result summary entries... tree | commitdiff
2009-09-10 Diane TroutReport if the Summary.htm file is missing the Lane... tree | commitdiff
2009-06-19 Diane TroutI started using ResultLane, so stop treating it like... tree | commitdiff
2009-06-17 Diane TroutAdd support for extracting data out of Illumina's new... tree | commitdiff
2009-06-17 Diane TroutLoading really old run xml files caused the website... tree | commitdiff
2009-06-17 Diane Troutremove spurious debug print statements tree | commitdiff
2009-05-11 Diane TroutFix parameter list for base class. tree | commitdiff
2009-05-05 Diane TroutHandle lanes that were only sequenced. tree | commitdiff
2009-05-05 Diane TroutReturn NaN, NaN if a mean +/- deviation value was undef... tree | commitdiff
2009-04-24 Diane Troutadd --clean option to runfolder tree | commitdiff
2009-03-31 Diane TroutUse the image directory name to detect what type of... tree | commitdiff
2009-03-31 Diane TroutDon't attempt to save xml for a matrix in firecrest... tree | commitdiff
2009-03-31 Diane Troutremove some useless debugging print statements tree | commitdiff
2009-03-30 Diane TroutAdd unit test to check that the crosstalk matrix was... tree | commitdiff
2009-03-30 Diane TroutIPAR detection is more reliable than firecrest so do... tree | commitdiff
2009-03-30 Diane TroutAllow specifying a run instead of just scanning the... tree | commitdiff
2009-03-28 Diane TroutFor pipeline 1.1rc1 or 1.3.2, look for the matrix files... tree | commitdiff
2009-03-28 Diane TroutMove sample data from simulate_runfolder into testdata tree | commitdiff
2009-03-18 Diane TroutGenerate a gerald config file, even if the genome is... tree | commitdiff
2009-03-16 Diane TroutParse runfolders generated with IPAR 1.3 and pipeline... tree | commitdiff
2009-03-10 Diane TroutImprove support for eland searching a single fasta... tree | commitdiff
2009-02-17 Diane Troutremove cfg_defaults. It was part of an idea I was start... tree | commitdiff
2009-02-13 Diane Troutsave longer comment describing change tree | commitdiff
2009-02-13 Diane TroutAparently some more recent version of multi eland stopped tree | commitdiff
2009-02-13 Diane TroutMerge in the library list, detail, and results download... tree | commitdiff
2009-02-12 Diane Troutmake our API docstrings more epydoc friendly tree | commitdiff
2009-02-12 Diane TroutAdd load_pipeline_run_xml, a little function that feeds... tree | commitdiff
2009-01-30 Diane TroutTry to make runfolder results extraction more robust tree | commitdiff
2009-01-30 Diane TroutUpdate to not hard code the config file name and the... tree | commitdiff
2009-01-06 Diane TroutLook in Temp directories for some of the files we have... tree | commitdiff
2008-12-24 Diane TroutHandle paired-end eland files. tree | commitdiff
2008-12-24 Diane Troutremove a debug print statement tree | commitdiff
2008-12-23 Diane Troutchange from hand coded formatting functions to the... tree | commitdiff
2008-12-23 Diane TroutUse the right URLError attribute names for error messages tree | commitdiff
2008-12-18 Diane Troutrename config file to something that doesn't include... tree | commitdiff
2008-12-10 Diane TroutThe summary parsing code now seems to handle paired... tree | commitdiff
2008-12-09 Diane TroutTest 1.1rc1 style runs, which unfortunately require... tree | commitdiff
2008-12-03 Diane TroutAdd test code to see if runfolder can handle something... tree | commitdiff
2008-12-03 Diane TroutAdd code to create a paired end Summary.htm file tree | commitdiff
2008-12-03 Diane TroutStore the bustard pathname when searching for run folders tree | commitdiff
2008-11-06 Diane TroutUpdated ipar_100 test case to deal with the using U0... tree | commitdiff
2008-11-06 Diane TroutProcess eland extended (or multi) read files. tree | commitdiff
2008-10-30 Diane TroutThe htsworkflow.pipelines.gerald module was getting... tree | commitdiff
2008-10-30 Diane TroutAdd support for scanning for results in the IPAR directory. tree | commitdiff
2008-10-15 Diane Troutrename pipeline to pipelines to imply that we can proce... tree | commitdiff
htsworkflow sequencing LIMS software