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Test htsworkflow under several different django & python versions
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
2017-02-28
Diane Trout
Port pipelines.sequences to rdflib
tree
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commitdiff
2016-06-24
Diane Trout
Unicode munging for python3
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commitdiff
2016-06-21
Diane Trout
Implement writing to compressed files for qseq2fastq
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commitdiff
2015-10-27
Diane Trout
make exception dotted name python3 compliant
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commitdiff
2015-10-20
Diane Trout
this works better with python 3...
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commitdiff
2015-09-08
Diane Trout
indicate we want text not bytes
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commitdiff
2015-04-06
Diane Trout
Drop support for simplejson
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commitdiff
2015-04-06
Diane Trout
Update test to be more robust to changing dictionary...
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commitdiff
2015-04-06
Diane Trout
convert non-unit-tested module to use newer raise Excep...
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commitdiff
2015-04-06
Diane Trout
convert several not covered by unit-test modules to...
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commitdiff
2015-03-27
Diane Trout
Merge branch 'django1.7' of mus.cacr.caltech.edu:htswor...
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commitdiff
2015-03-20
Diane Trout
Convert reads to an integer, if if it was a float in...
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commitdiff
2015-03-20
Diane Trout
Actually comare an integer (length of list) to an integ...
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commitdiff
2015-03-20
Diane Trout
Use six.moves to find urlencode and urlopen
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commitdiff
2015-03-20
Diane Trout
filter out None c.times in list of potential times
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commitdiff
2015-03-20
Diane Trout
adapt to python2 returning lists and python3 iterators
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commitdiff
2015-03-20
Diane Trout
use sorted on the iterator instead of an in-place sort
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commitdiff
2015-03-20
Diane Trout
Use max on the iterator to find the last key
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commitdiff
2015-03-20
Diane Trout
add more from __future__ import print_function, unicode...
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commitdiff
2015-03-20
Diane Trout
Call print(msg) instead of print msg
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commitdiff
2015-03-20
Diane Trout
Use isinstance(object, (types)) pattern instead of...
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commitdiff
2015-03-20
Diane Trout
Specify text vs binary mode for opening files.
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commitdiff
2015-03-20
Diane Trout
prefer native string types.
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commitdiff
2015-03-20
Diane Trout
update more raise exceptions to Exception(message)...
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commitdiff
2015-03-19
Diane Trout
Use django.utils.encode smart_text or smart_str for...
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commitdiff
2015-03-18
Diane Trout
import ConfigParser classes from six.moves.configparser
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commitdiff
2015-02-03
Diane Trout
convert to unicode_literals
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commitdiff
2015-02-02
Diane Trout
take advantage of absolute_import to simplify import...
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commitdiff
2015-02-02
Diane Trout
Replace elif list() > int() with else
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commitdiff
2015-01-30
Diane Trout
Convert alphanum sort from comparitor to key operator
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commitdiff
2015-01-29
Diane Trout
update srf2fastq detection code to work with byte arrays
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commitdiff
2015-01-29
Diane Trout
assume we are writing text with gzip
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commitdiff
2015-01-29
Diane Trout
replace iterkeys with python 3 equivalents
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commitdiff
2015-01-29
Diane Trout
convert has_key to X in dictionary
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commitdiff
2015-01-29
Diane Trout
use six.moves to work around urllib / urllib2 / urlpars...
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commitdiff
2015-01-29
Diane Trout
convert to print_function, and start adding unicode_lit...
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commitdiff
2015-01-29
Diane Trout
remove ,'s from more except blocks, and now a raise too
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commitdiff
2015-01-29
Diane Trout
more use six.moves to import StringIO
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commitdiff
2015-01-29
Diane Trout
whitespace-cleanup
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commitdiff
2015-01-29
Diane Trout
remove some commented out code
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commitdiff
2015-01-29
Diane Trout
convert to print_function
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commitdiff
2015-01-29
Diane Trout
Convert old style except blocks to except Exception...
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commitdiff
2015-01-21
Diane Trout
Update test_retrieve_config to work with factories
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commitdiff
2015-01-14
Diane Trout
fix spelling error in module name
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commitdiff
2014-07-24
Diane Trout
Flatten project hierarchy, moving djano applications...
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commitdiff
2014-06-19
Diane Trout
remove file created by typoing file name
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commitdiff
2014-06-19
Diane Trout
Change unittest2 back into unittest.
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commitdiff
2014-06-19
Diane Trout
Explicitly list initial_data.json for the test data...
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commitdiff
2014-06-10
Diane Trout
Indicate when desplit_fastq didn't get any files to...
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commitdiff
2014-06-10
Diane Trout
Make sure we can load a run file that lacks alignment...
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commitdiff
2014-06-10
Diane Trout
use autoopen to access fastq files
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commitdiff
2014-06-10
Diane Trout
Start implementing tool to compute library fastq quality
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commitdiff
2014-06-10
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-02-18
Diane Trout
Add option to compress fastq file
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commitdiff
2014-01-22
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2014-01-08
Diane Trout
Rename stripNamespace strip_namespace
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commitdiff
2013-12-23
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commitdiff
2013-12-17
Diane Trout
remove some test code debugging print statements
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commitdiff
2013-12-17
Diane Trout
Merge branch 'django1.4'
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commitdiff
2013-12-10
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
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commitdiff
2013-12-06
Diane Trout
After implementing proper tests get a working implement...
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commitdiff
2013-12-06
Diane Trout
After implementing proper tests get a working implement...
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commitdiff
2013-12-05
Diane Trout
fix typo
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commitdiff
2013-12-05
Diane Trout
fix typo
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commitdiff
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
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commitdiff
2013-12-05
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
tree
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commitdiff
2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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commitdiff
2013-12-05
Diane Trout
Recent IPAR xml config blocks include the runfolder...
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commitdiff
2013-12-02
Diane Trout
Catch and report another class of exception
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commitdiff
2013-10-21
Diane Trout
Merge remote-tracking branch 'brisby/django1.4' into...
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commitdiff
2013-10-21
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
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commitdiff
2013-10-17
Diane Trout
Merge branch 'master' into django1.4
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commitdiff
2013-10-17
Diane Trout
Add command line feature to srf command
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commitdiff
2013-10-17
Diane Trout
Dynamically respond to the number of lanes.
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commitdiff
2013-07-22
Diane Trout
Move version finding code into the util directory.
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commitdiff
2013-02-01
Diane Trout
Make a sample key list to go along with our lane list
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commitdiff
2013-01-16
diane
Add more entries to genome version detection map.
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commitdiff
2013-01-16
Diane Trout
Support scanning HiSeq runs with multiple analyses.
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commitdiff
2013-01-16
Diane Trout
Thrown an exception if we can't parse base calling...
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commitdiff
2013-01-15
Diane Trout
Start making documentation for htsworkflow.
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commitdiff
2013-01-09
Diane Trout
A better resolution to a possible circular dependency.
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commitdiff
2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
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commitdiff
2013-01-08
Diane Trout
Try to make Aligned result directories optional in...
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commitdiff
2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
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commitdiff
2013-01-08
Diane Trout
Tweak timestamp format.
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commitdiff
2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
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commitdiff
2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
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commitdiff
2012-11-29
Diane Trout
Remove prints that were being called in test code.
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-16
Diane Trout
Further attempts to validate RDF models.
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commitdiff
2012-09-24
Diane Trout
Merge changing lane_number to string and sequence findi...
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commitdiff
2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
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commitdiff
2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-18
Diane Trout
Progress using rdf model to link fastqs with flowcell...
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commitdiff
2012-08-31
Diane Trout
Older rdf library doesn't like unicode strings as nodes
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commitdiff
2012-08-31
Diane Trout
Allow option to save/restore a sequence class to a...
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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