projects / htsworkflow.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Dynamically respond to the number of lanes.
[htsworkflow.git] / htsworkflow /
2012-07-05 Diane TroutMassively rework eland file finding and indexing. tree | commitdiff
2012-07-05 Diane TroutRename chromosome in hiseq test set to match our fake... tree | commitdiff
2012-06-30 Diane TroutDisable debug messages for each scanned eland file... tree | commitdiff
2012-06-30 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-06-30 Diane TroutSupport multiple having an eland file split into multip... tree | commitdiff
2012-06-30 Diane TroutSome minor tweaks to rta 1.12 testing. tree | commitdiff
2012-06-30 Diane TroutProperly code in tabs for simulated hiseq export files tree | commitdiff
2012-06-30 Diane TroutUse different tags indicating gerald or casava style... tree | commitdiff
2012-06-27 Diane TroutIf I'm going to make a call to logger, I really should... tree | commitdiff
2012-06-27 Diane TroutOnly allow one default cluster station or sequencer... tree | commitdiff
2012-06-27 Diane TroutOnly allow one default cluster station or sequencer... tree | commitdiff
2012-06-27 Diane TroutAuto-generate a secret key for django and store in... tree | commitdiff
2012-06-26 Diane TroutAdd the ability to specify default cluster station... tree | commitdiff
2012-06-26 Diane Troutreformatting to be more pep8 like tree | commitdiff
2012-06-25 Diane TroutConvert dictionary comprehension to dict(generator... tree | commitdiff
2012-06-25 Diane TroutAdapt select strike-out widget to django 1.2 tree | commitdiff
2012-06-23 Diane TroutForgot to add the css file to add 'active' state to... tree | commitdiff
2012-06-23 Diane TroutAdd an 'active' state to the sequencers. tree | commitdiff
2012-06-22 Diane TroutShow software version information on datarun page tree | commitdiff
2012-06-22 Diane TroutSave pipeline version information from run_xml into... tree | commitdiff
2012-06-21 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-06-15 Diane TroutMove typeof. I think its now getting parsed by rapper... tree | commitdiff
2012-06-14 Diane TroutImport information from NCBI SRA into a RDF model. tree | commitdiff
2012-06-12 Diane TroutAdd a software (name) property to firecrest, ipar,... tree | commitdiff
2012-06-11 Diane TroutReturn a gerald version number as a number and not... tree | commitdiff
2012-06-07 Diane TroutAdd instrument ID and model to sequencer table tree | commitdiff
2012-06-02 Diane TroutSplit lane parameters into seperate classes for GA... tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane Troutreplace tab charcter with spaces in the multiplex index... live tree | commitdiff
2012-05-25 Diane TroutMerge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor... tree | commitdiff
2012-05-25 Diane TroutFix Multiplex index pluralization tree | commitdiff
2012-05-23 Diane TroutGenerate html reports when doing sparql queries with... tree | commitdiff
2012-05-16 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-16 Diane TroutTweak some test code to work with librdf 1.0.10 tree | commitdiff
2012-05-16 Diane Troutupdate summary.py to extract data from HiSeq runs. tree | commitdiff
2012-05-15 Diane TroutFix bugs introduduced by the improved HiSeq runfolder... tree | commitdiff
2012-05-12 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-05-12 Diane TroutProperly constructing the geo soft file really needed... tree | commitdiff
2012-05-12 Diane TroutPrepare for submitting data to geo by: tree | commitdiff
2012-05-10 Diane TroutMinimal changes needed to get raw data archived for... tree | commitdiff
2012-05-04 Diane Trout100% test coverage for alphanum.py tree | commitdiff
2012-05-03 Diane TroutRename a cell-line since we're now using "treatment... tree | commitdiff
2012-04-17 Diane TroutRename global logger to LOGGER to be more PEP8 like tree | commitdiff
2012-04-13 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-04-12 Diane TroutExtend the adapter id field to support the dual indexed... tree | commitdiff
2012-04-11 Diane TroutStart developing GEO SOFT submission tool. tree | commitdiff
2012-04-11 Diane TroutMove code out of ucsc_gather and into the htsworkflow... tree | commitdiff
2012-03-29 Diane TroutChange to using django templates for generating condor... tree | commitdiff
2012-03-29 Diane TroutImprove a settings error message, as it was confusing... tree | commitdiff
2012-03-27 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2012-03-26 Diane TroutSwitch to lxml for parsing the summary file. tree | commitdiff
2012-03-23 Diane TroutApparently I forgot to remove a parameter why creating... tree | commitdiff
2012-03-22 Diane TroutMessed up the RDFa for specifying that a library was... tree | commitdiff
2012-03-22 Diane TroutUse name instead of library_name as the property descri... tree | commitdiff
2012-03-08 Diane TroutActually if I provide an output file, I want to write... tree | commitdiff
2012-03-07 Diane TroutAlways include the python path when generating the... tree | commitdiff
2012-03-07 Diane TroutForgot to add split attribute to __eq__ test. tree | commitdiff
2012-03-07 Diane TroutAdd extract HiSeq project based split fastq files to... tree | commitdiff
2012-03-06 Diane TroutSupport scanning for split fastq files generated by... tree | commitdiff
2012-03-06 Diane TroutAdd module to convert multiple fastq files into a singl... tree | commitdiff
2012-03-06 Diane TroutAdd ability to print out json structures returned by... tree | commitdiff
2012-03-05 Diane TroutUse named tuple for sequence flowcell/start/stop/projec... tree | commitdiff
2012-03-02 Diane TroutCore functions for saving and finding fastq files gener... tree | commitdiff
2012-03-01 Diane TroutRemove some debug prints tree | commitdiff
2012-03-01 Diane TroutSimulate a HiSeq runfolder. tree | commitdiff
2012-01-30 Diane TroutAdd ability to refresh library data from our htsw server tree | commitdiff
2012-01-25 Diane TroutAdded scanning for libraries that aren't attached to... tree | commitdiff
2012-01-25 Diane Troutsplit a function into two. (A query execute function... tree | commitdiff
2012-01-25 Diane TroutChanged pprint daf attributes to a pformat output via... tree | commitdiff
2012-01-23 Diane TroutDon't use assertIn as older ubuntu python doesn't have it tree | commitdiff
2012-01-23 Diane TroutInvalid library IDs should 404, not return a useless... tree | commitdiff
2011-12-20 Diane TroutHandle dateTime timestamps in RDF.Nodes tree | commitdiff
2011-12-20 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-12-20 Diane Troutwhitespace reformatting tree | commitdiff
2011-12-20 Diane TroutRemove eXecute bit from modules tree | commitdiff
2011-12-20 Diane TroutAdd in test code for testing downloading the ucsc downl... tree | commitdiff
2011-12-20 Diane TroutTry to figure out where UCSC is hosting our submitted... tree | commitdiff
2011-11-22 Diane TroutAdd a method to override command used to convert srf... tree | commitdiff
2011-11-07 Diane TroutUse Node.uri instead of manually trimming off RDF.Node... tree | commitdiff
2011-11-07 Diane TroutFunction generating index text was assuming there'd... tree | commitdiff
2011-11-07 Diane TroutUpdate library adapter type initial data to match lorie... tree | commitdiff
2011-11-07 Diane TroutMerge in removal of queuecommand sleep. tree | commitdiff
2011-11-05 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow tree | commitdiff
2011-11-04 Diane TroutUse a logger initialized to the module name much more... tree | commitdiff
2011-11-04 Diane TroutLorian renamed some of the libraries, change our hard... tree | commitdiff
2011-10-21 Diane TroutYes generate regular gerald config file. tree | commitdiff
2011-10-18 Diane TroutAdd library adapter type to filter choices, tree | commitdiff
2011-10-13 Diane TroutAllow replicates 5 & 6 tree | commitdiff
2011-10-11 Diane TroutUse "not run" instead of todo to describe libraries... tree | commitdiff
2011-10-11 Diane TroutAdd a todo view that shows only libraries that have no tree | commitdiff
2011-10-10 Diane TroutRemove ReadPrep and Thumbnail_Images being generated... tree | commitdiff
2011-10-10 Diane TroutDon't need to duplicate %t tile in srf command tree | commitdiff
2011-10-06 Diane TroutAdd the ability to specify a flowcell id instead of... tree | commitdiff
2011-10-04 Diane TroutAdd support for flowcells analyzed with Casava 1.7 tree | commitdiff
2011-09-30 Diane TroutConfigure daf variables in only one place. (daf.py) tree | commitdiff
2011-09-30 Diane TroutAdd support for new "extraVariables" term in DAF. tree | commitdiff
2011-09-22 Diane TroutMark library & flowcell as a type in RDF. tree | commitdiff
2011-09-21 Diane TroutSwitch from beautifulsoup to lxml, now that I know... tree | commitdiff
2011-09-19 Diane TroutOutput samples that don't have index sequence as well. tree | commitdiff
2011-09-19 Diane TroutPython 2.6's DictWriter doesn't have writeheader, so... tree | commitdiff
next
htsworkflow sequencing LIMS software