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Don't accidentally transform an object into a tuple.
[htsworkflow.git]
/
htsworkflow
/
2013-01-09
Diane Trout
Don't accidentally transform an object into a tuple.
tree
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commitdiff
2013-01-08
Diane Trout
Merge branch 'django1.4' of mus.cacr.caltech.edu:htswor...
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commitdiff
2013-01-08
Diane Trout
Try to make Aligned result directories optional in...
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commitdiff
2013-01-08
Diane Trout
Add unaligned stats files to hiseq test case
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commitdiff
2013-01-08
Diane Trout
Tweak timestamp format.
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commitdiff
2012-12-14
Diane Trout
Gerald's time-stamp format was inconsistent.
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commitdiff
2012-12-14
Diane Trout
Make my ChangeList sub-class compatibile with Django 1.3
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commitdiff
2012-12-13
Diane Trout
Make the inventory pages work with the new HTSChangeList.
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commitdiff
2012-12-13
Diane Trout
Django 1.4 requires the csrf token for posts.
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commitdiff
2012-12-13
Diane Trout
Use specific time formatting instead of locale '%c'
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commitdiff
2012-12-13
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkfl...
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commitdiff
2012-12-12
Diane Trout
Simplify linking fastq files to their library id.
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commitdiff
2012-12-08
Diane Trout
Add a FastqName class to create and parse standardized...
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commitdiff
2012-11-30
Diane Trout
Change my copied version of admin.changelist to a subclass.
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commitdiff
2012-11-30
Diane Trout
The formatting for the model name changed.
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commitdiff
2012-11-29
Diane Trout
Add a few more records for django db initial_data.json.
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commitdiff
2012-11-29
Diane Trout
Use unittest2's module hooks for setting up the django...
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commitdiff
2012-11-29
Diane Trout
Change csrf imports and database settings for django 1.4
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commitdiff
2012-11-29
Diane Trout
Remove prints that were being called in test code.
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commitdiff
2012-11-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-11-28
Diane Trout
Changed name= to verbose_name= for LibraryType.
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commitdiff
2012-11-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-11-28
Diane Trout
Make extra sure Django's setup test environment is...
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-28
Diane Trout
Convert to unittest2
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commitdiff
2012-11-27
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-11-27
Diane Trout
Ignoring the missing type RDF error for the page under...
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commitdiff
2012-11-20
Diane Trout
Test presence of species & species name on library...
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commitdiff
2012-11-20
Diane Trout
Correctly implement merging Notification & Manager...
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commitdiff
2012-11-20
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-11-20
Diane Trout
Renamed various django tests.py to test_module.py
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commitdiff
2012-11-20
Diane Trout
Fix RDF schema problems with lane_number and species.
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commitdiff
2012-11-20
Diane Trout
Run the library detail page through RDF validation.
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commitdiff
2012-11-20
Diane Trout
Change add_default_schema to use pkg_resources feature...
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commitdiff
2012-11-20
Diane Trout
rdf:Resource can be either a resource or a blank node.
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commitdiff
2012-11-20
Diane Trout
Uniquely merge BCC and Manager lists for sending notifi...
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commitdiff
2012-11-16
Diane Trout
Further attempts to validate RDF models.
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commitdiff
2012-11-14
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
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commitdiff
2012-10-11
Diane Trout
Catch another lookup error.
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commitdiff
2012-09-27
Diane Trout
older librdf wanted to include type information when...
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commitdiff
2012-09-27
Diane Trout
When collecting files for a geo submission, group on...
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commitdiff
2012-09-25
Diane Trout
This might actually generate soft file with raw & suppl...
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commitdiff
2012-09-24
Diane Trout
Merge changing lane_number to string and sequence findi...
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commitdiff
2012-09-24
Diane Trout
Define XHTML_RDF_DTD as None when we can't load the DTD
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commitdiff
2012-09-24
Diane Trout
Make the public html pages valid xhtml, and validate...
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commitdiff
2012-09-24
Diane Trout
remove some dead commented out code.
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commitdiff
2012-09-20
Diane Trout
Fix (some) missing closing tags.
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commitdiff
2012-09-20
Diane Trout
Make a validation error message between different ages...
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commitdiff
2012-09-20
Diane Trout
Also make the library index page conform to htsworkflow...
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commitdiff
2012-09-20
Diane Trout
Minor tweaks to deal with the older version of librdf...
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commitdiff
2012-09-19
Diane Trout
Use htsworkflow ontology to validate various RDF using...
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commitdiff
2012-09-19
Diane Trout
Refactor property type validator to support multiple...
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commitdiff
2012-09-19
Diane Trout
Add stub xhtml vocab ontology, to make model validation...
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commitdiff
2012-09-18
Diane Trout
Merge ssh://jumpgate.caltech.edu/var/htsworkflow/htswor...
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commitdiff
2012-09-18
Diane Trout
email.bcc should be a list, not a nested list.
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-18
Diane Trout
Improvements to rdfinfer.
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commitdiff
2012-09-18
Diane Trout
Change rdfhelp.dump_model so you can specify a destinat...
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commitdiff
2012-09-18
Diane Trout
Progress using rdf model to link fastqs with flowcell...
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commitdiff
2012-09-18
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-09-15
Diane Trout
Start implementing infering triples.
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commitdiff
2012-09-12
Diane Trout
Be more defensive if the database is missing some data...
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commitdiff
2012-09-12
Diane Trout
fix a wrong variable name
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commitdiff
2012-09-12
Diane Trout
Tweaks to make the sample gather query faster.
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commitdiff
2012-09-12
Diane Trout
Another tweak to allow parser detection to work on...
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commitdiff
2012-09-11
Diane Trout
Better parser guessing when grabbing plain text from...
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commitdiff
2012-09-10
Diane Trout
Use the same model for building fastqs as for building...
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commitdiff
2012-09-10
Diane Trout
Allow retrying retrieving rdf from website a few times.
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commitdiff
2012-09-01
Diane Trout
Import flowcell information into our model this allows
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commitdiff
2012-09-01
Diane Trout
Have librdf open the urls in load_into_model instead...
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commitdiff
2012-08-31
Diane Trout
Older rdf library doesn't like unicode strings as nodes
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commitdiff
2012-08-31
Diane Trout
Fix matching scanned sequence files to library IDs...
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commitdiff
2012-08-31
Diane Trout
Inherit from MutableMapping for ResultMap.
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commitdiff
2012-08-31
Diane Trout
Allow option to save/restore a sequence class to a...
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commitdiff
2012-08-28
Diane Trout
Test RDFa encoded information for flowcell & libraries.
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commitdiff
2012-08-28
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-28
Diane Trout
sanitize_literal had trouble with empty strings.
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commitdiff
2012-08-28
Diane Trout
Attempt to come up with regexp to detect hiseq formatte...
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commitdiff
2012-08-09
Diane Trout
Fix some mismatches between variable names in python...
tree
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commitdiff
2012-08-07
Diane Trout
Create a lane to file name turtle data file
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commitdiff
2012-08-07
Diane Trout
Simplify code to see if we already have a DataRun created.
tree
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-06
Diane Trout
Don't link to lane for the raw result files section.
tree
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commitdiff
2012-08-06
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-06
Diane Trout
Use default printer settings again.
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commitdiff
2012-08-06
Diane Trout
Test proper setting of sequence project variable
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commitdiff
2012-08-02
Diane Trout
Test more of the sequences class.
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commitdiff
2012-08-02
Diane Trout
Fix a few more formatting issues with the geo template
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commitdiff
2012-08-01
Diane Trout
Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow
tree
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commitdiff
2012-08-01
Diane Trout
GEO wanted both files for a paired lane to be on a...
tree
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commitdiff
2012-07-27
Diane Trout
Fix issues introduced when switching to the django...
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commitdiff
2012-07-25
Diane Trout
Actually we want to capture the unanalyzed lanes if...
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commitdiff
2012-07-24
Diane Trout
Get actual list of sequencers used for a library.
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commitdiff
2012-07-23
Diane Trout
Update to our current IPs. I'm tired of syncdb overwrit...
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commitdiff
2012-07-19
Diane Trout
Adapt building qseq or srf archives to use SampleKey...
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commitdiff
2012-07-19
Diane Trout
Update save_raw_data to SampleKey api
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commitdiff
2012-07-19
Diane Trout
Add in a few more genomes to detection code
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commitdiff
2012-07-17
Diane Trout
Fix library viewing code to read HiSeq run xmls.
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commitdiff
2012-07-16
Diane Trout
Remove default sequence-format so the new auto-detector...
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commitdiff
2012-07-14
Diane Trout
Attempt to guess raw sequence type for a run.
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