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2011-12-20	Diane Trout	Remove eXecute bit from modules	commit \| commitdiff \| tree
2011-12-20	Diane Trout	Include the test data for testing importing ucsc download...	commit \| commitdiff \| tree
2011-12-20	Diane Trout	Add in test code for testing downloading the ucsc download...	commit \| commitdiff \| tree
2011-12-20	Diane Trout	Deleted obsolete tests	commit \| commitdiff \| tree
2011-12-20	Diane Trout	Try to figure out where UCSC is hosting our submitted...	commit \| commitdiff \| tree
2011-11-22	Diane Trout	Add a method to override command used to convert srf...	commit \| commitdiff \| tree
2011-11-07	Diane Trout	Use Node.uri instead of manually trimming off RDF.Node...	commit \| commitdiff \| tree
2011-11-07	Diane Trout	Function generating index text was assuming there'd...	commit \| commitdiff \| tree
2011-11-07	Diane Trout	Update library adapter type initial data to match loriens...	commit \| commitdiff \| tree
2011-11-07	Diane Trout	Merge in removal of queuecommand sleep.	commit \| commitdiff \| tree
2011-11-05	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-11-04	Diane Trout	Use a logger initialized to the module name much more...	commit \| commitdiff \| tree
2011-11-04	Diane Trout	Lorian renamed some of the libraries, change our hard...	commit \| commitdiff \| tree
2011-10-21	Diane Trout	Yes generate regular gerald config file.	commit \| commitdiff \| tree
2011-10-18	Diane Trout	Add library adapter type to filter choices,	commit \| commitdiff \| tree
2011-10-13	Diane Trout	Allow replicates 5 & 6	commit \| commitdiff \| tree
2011-10-11	Diane Trout	Use "not run" instead of todo to describe libraries...	commit \| commitdiff \| tree
2011-10-11	Diane Trout	Add a todo view that shows only libraries that have no	commit \| commitdiff \| tree
2011-10-10	Diane Trout	Remove ReadPrep and Thumbnail_Images being generated...	commit \| commitdiff \| tree
2011-10-10	Diane Trout	Don't need to duplicate %t tile in srf command	commit \| commitdiff \| tree
2011-10-06	Diane Trout	Add the ability to specify a flowcell id instead of...	commit \| commitdiff \| tree
2011-10-04	Diane Trout	Add support for flowcells analyzed with Casava 1.7	commit \| commitdiff \| tree
2011-09-30	Diane Trout	Sparql query to back create protocol & treatment from...	commit \| commitdiff \| tree
2011-09-30	Diane Trout	find submissions, even those without a set creation...	commit \| commitdiff \| tree
2011-09-30	Diane Trout	store md5sum of daf files to group different submissions	commit \| commitdiff \| tree
2011-09-30	Diane Trout	Configure daf variables in only one place. (daf.py)	commit \| commitdiff \| tree
2011-09-30	Diane Trout	Add support for new "extraVariables" term in DAF.	commit \| commitdiff \| tree
2011-09-22	Diane Trout	Mark library & flowcell as a type in RDF.	commit \| commitdiff \| tree
2011-09-21	Diane Trout	Switch from beautifulsoup to lxml, now that I know...	commit \| commitdiff \| tree
2011-09-21	Diane Trout	Rename ucsc submission namespace to be more consistent...	commit \| commitdiff \| tree
2011-09-19	Diane Trout	Output samples that don't have index sequence as well.	commit \| commitdiff \| tree
2011-09-19	Diane Trout	Python 2.6's DictWriter doesn't have writeheader, so...	commit \| commitdiff \| tree
2011-09-17	Diane Trout	Disable csrf protection for the json urls	commit \| commitdiff \| tree
2011-09-17	Diane Trout	Add support for tracking the multiplex index sequence.	commit \| commitdiff \| tree
2011-09-12	Diane Trout	Add support for first-gen HiSeq flowcells (e.g. ABXX)	commit \| commitdiff \| tree
2011-09-08	Diane Trout	Django 1.1's csrf protection appears to be handled...	commit \| commitdiff \| tree
2011-09-08	Diane Trout	Add links to the admin page on the public pages if...	commit \| commitdiff \| tree
2011-09-08	Diane Trout	Make it so the login link redirects you back to the...	commit \| commitdiff \| tree
2011-09-08	Diane Trout	Emacs stripped off trailing whitespace	commit \| commitdiff \| tree
2011-09-07	Diane Trout	Add link to admin page to flowcell & library pages...	commit \| commitdiff \| tree
2011-09-07	Diane Trout	Remove margin-right command as it was making a giant...	commit \| commitdiff \| tree
2011-09-02	Diane Trout	Ignore some files generated by my (diane's) development...	commit \| commitdiff \| tree
2011-09-02	Diane Trout	Attempt to download DAF data for a encodesubmit submission	commit \| commitdiff \| tree
2011-09-02	Diane Trout	Add error message for requesting link-daf but no daf...	commit \| commitdiff \| tree
2011-08-31	Diane Trout	Enable csrf proection when running under Django 1.2	commit \| commitdiff \| tree
2011-08-18	Diane Trout	Rescan a flowcell data run once per (setting.RESCAN_DELAY...	commit \| commitdiff \| tree
2011-08-08	Diane Trout	Deal with (failed) in flowcell names.	commit \| commitdiff \| tree
2011-08-04	Diane Trout	Add a way to browse the list of entered antibody/antigene	commit \| commitdiff \| tree
2011-07-29	Diane Trout	Make a test more robust to different versions of librdf	commit \| commitdiff \| tree
2011-07-29	Diane Trout	Construct unit tests for inventory/hard disk long term...	commit \| commitdiff \| tree
2011-07-28	Diane Trout	Examine the DAF to determine if the DDF needs to include...	commit \| commitdiff \| tree
2011-07-20	Diane Trout	Stop copying attributes from library to a submission...	commit \| commitdiff \| tree
2011-07-20	Diane Trout	Remove spurious debugging print statement	commit \| commitdiff \| tree
2011-07-20	Diane Trout	Add an option to print out an example view to extension...	commit \| commitdiff \| tree
2011-07-20	Diane Trout	Make searching library & cell line more robust to missing...	commit \| commitdiff \| tree
2011-07-20	Diane Trout	Search for both encode & mouse encode projects.	commit \| commitdiff \| tree
2011-07-20	Diane Trout	Update old dt-overrides.turtle example to use the newer...	commit \| commitdiff \| tree
2011-07-13	Diane Trout	Make antibody catalog number optional for creating...	commit \| commitdiff \| tree
2011-07-13	Diane Trout	Make sure we can roundtrip unicode characters via converting...	commit \| commitdiff \| tree
2011-07-09	Diane Trout	Add "Count of multi-reads" back into the library page	commit \| commitdiff \| tree
2011-07-07	Diane Trout	Don't use xsd:string for string data types in toTypedNode	commit \| commitdiff \| tree
2011-07-07	Diane Trout	Library urls have a trailing /. make sure the test...	commit \| commitdiff \| tree
2011-07-07	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-07-07	Diane Trout	Fix namespace issues in encode_find after the conversion	commit \| commitdiff \| tree
2011-07-06	Diane Trout	Add some additional logging to util/rdflib.py to help...	commit \| commitdiff \| tree
2011-07-01	Diane Trout	Make sure that the lane set is sorted on the flowcell...	commit \| commitdiff \| tree
2011-06-30	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-30	Diane Trout	The proper DDF variable name for files to be submitted...	commit \| commitdiff \| tree
2011-06-30	Diane Trout	Older librdf gets cranky when mixing unicode & strings	commit \| commitdiff \| tree
2011-06-30	Diane Trout	Django 1.1 doesn't support validators so remove it...	commit \| commitdiff \| tree
2011-06-30	Diane Trout	Fix typo in a template	commit \| commitdiff \| tree
2011-06-30	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-30	Diane Trout	switch fix_ob3 to the better way of finding settings...	commit \| commitdiff \| tree
2011-06-29	Diane Trout	Further clean up ddf generation.	commit \| commitdiff \| tree
2011-06-28	Diane Trout	Start supporting multiple libraries per lane, as needed...	commit \| commitdiff \| tree
2011-06-23	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-22	Diane Trout	Slightly alter some tests to work with versions of...	commit \| commitdiff \| tree
2011-06-22	Diane Trout	Move parse_flowcell_id out of frontend.samples.results	commit \| commitdiff \| tree
2011-06-22	Diane Trout	allow running ucsc_gather --fastq without specifying...	commit \| commitdiff \| tree
2011-06-21	Diane Trout	Finish new RDF based ddf construction.	commit \| commitdiff \| tree
2011-06-18	Diane Trout	Rework ucsc gather to use RDF models for gathering...	commit \| commitdiff \| tree
2011-06-18	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-18	Diane Trout	Include the library_id in addition to the RDFa library uri	commit \| commitdiff \| tree
2011-06-17	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-17	Diane Trout	Minor RDFa fixes.	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Start to move all the RDF namespace definitions into...	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Add module to parse UCSC DAF file.	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Move code to make srf and qseq to fastq condor scripts...	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Sample Test RDFA needed the flowcell id field	commit \| commitdiff \| tree
2011-06-15	Diane Trout	Remove some uneeded linefeeds	commit \| commitdiff \| tree
2011-06-14	Diane Trout	Fix a template typo	commit \| commitdiff \| tree
2011-06-13	Diane Trout	Supprose IVC plot table rows if we don't have data...	commit \| commitdiff \| tree
2011-06-13	Diane Trout	Follow the flowcell link from the library page.	commit \| commitdiff \| tree
2011-06-13	Diane Trout	The get_permanent_link function on the flowcell model...	commit \| commitdiff \| tree
2011-06-13	Diane Trout	Remove some now unnecessary coments and reformat some...	commit \| commitdiff \| tree
2011-06-11	Diane Trout	python's 2.6 uuid function doesn't cast to a string...	commit \| commitdiff \| tree
2011-06-11	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2011-06-11	Diane Trout	Convert Rami's DataRun feature to something useful...	commit \| commitdiff \| tree
2011-06-09	Diane Trout	Move test srf files to testdata directory so I can...	commit \| commitdiff \| tree
2011-06-09	Diane Trout	Add a method to return the runfolder name.	commit \| commitdiff \| tree
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