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Added new program to profile reads using bedgraph format. Deep sequencing projects...
2009-01-03 Tim Reddy TimAdded new program to profile reads using bedgraph format...
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2008-12-24 Tim Reddy TimInitial check in of c++ short read programming library...
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2008-12-24 Tim Reddy TimBugfixes
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2008-12-23 Tim Reddy TimWorking on a bug fix...
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2008-12-23 Tim Reddy TimAdded code to identify snps and update the gneome accordingl...
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2008-12-16 Tim Reddy TimForgot to add count_reads.pm script
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2008-12-16 Tim Reddy TimUpdated read counts to give information about aligment...
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2008-12-12 Tim Reddy TimSmall edits to make code nicer.
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2008-12-12 Tim Reddy TimInitial checkin of code to evaluate known snps from...
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2008-12-12 Tim Reddy TimFinal installation of methylseq analysis.
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2008-12-12 Tim Reddy Tim(no commit message)
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2008-12-08 Tim Reddy TimAdded hg18 known genes file from ucsc
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2008-12-08 Tim Reddy TimBug fixes to bring up methylseq analysis Tasks
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2008-12-08 Tim Reddy TimAdded framework for methylseq analysis.
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2008-12-03 Tim Reddy TimBug-fixes in sequence repository code and projects...
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2008-11-25 Tim Reddy Timminor typo.
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2008-11-25 Tim Reddy TimSmall change to handle the odd case when no alignment...
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2008-11-25 Tim Reddy TimMinor typeo fix
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2008-11-25 Tim Reddy TimRe-factored the repository to automatically calculate...
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2008-11-25 Tim Reddy TimMajor analysis server update. Had to switch to a new...
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2008-11-25 Tim Reddy TimAdded script front-end for primer-design code
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2008-11-25 Tim Reddy TimAdded qPCR Validation design code
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2008-11-24 Tim Reddy TimAdd validation primer code to MACS source
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2008-11-24 Tim Reddy TimMoving QC functionalty into repository so we can run...
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2008-11-24 Tim Reddy TimRemoved from hard-coded directories. Starting to bring...
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2008-11-24 Tim Reddy TimChanges the install line to be a copy instead of a...
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2008-09-03 Tim Reddy TimUpdates to profile reads to be more general in how...
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2008-08-30 Tim Reddy TimAdded installation notes
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2008-08-29 Tim Reddy TimAdded MACS source
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2008-08-29 Tim Reddy TimMinor typos fixes
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2008-08-28 Tim Reddy TimFirst complete Projects/Tasks build.
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2008-08-28 Tim Reddy TimAdded a program to help compare libraries
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2008-08-21 Tim Reddy TimTasks functionality added. Lots of cleanup to do, but...
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2008-08-20 Tim Reddy TimAdded align_to_bed script. Used to turn MACS output...
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2008-08-20 Tim Reddy TimAdded wiggle fiole generation
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2008-08-20 Tim Reddy TimQuest_2_bed conversaion added.
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2008-08-19 Tim Reddy TimAdded auxillliary programs needed to run projects
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2008-08-19 Tim Reddy TimSmalle bug fix
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2008-08-19 Tim Reddy Timadded comm module of communication.
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2008-08-19 Tim Reddy TimAdded communitaion between projects and lims
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2008-08-19 Tim Reddy TimInitial attempt to get Projects and Tasks framework...
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2008-08-18 Tim Reddy TimMajor bug-fix where some probes in the in-silico qPCR...
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2008-08-18 Tim Reddy TimSmall change to fix directory structure problem
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2008-08-14 Tim Reddy TimFixed another directory problem: the libraries repo...
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2008-08-14 Tim Reddy TimFixed directories to be more general and easy to set...
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2008-08-14 Tim Reddy TimFixed bug that bailed on empty alignment files. (weird...
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2008-08-14 Tim Reddy TimTook our some old targets from the Makefile that are...
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2008-08-14 Tim Reddy TimMade changes to add quarterly information to the sequencign...
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2008-08-13 Tim Reddy TimBig steps on getting the library automation going....
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htsworkflow sequencing LIMS software