| 2009-09-26 |
Diane Trout | The config file should also set the SEQUENCE_FORMAT
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commit | commitdiff | tree |
| 2009-09-26 |
Diane Trout | HttpRequest.getcode doesn't exist in python 2.4, use...
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commit | commitdiff | tree |
| 2009-09-26 |
Diane Trout | Implement a client side config file generator.
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commit | commitdiff | tree |
| 2009-09-26 |
Diane Trout | Print library.library_id instead of the flowcell.library_id.
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commit | commitdiff | tree |
| 2009-09-23 |
Diane Trout | Return species information as part of the flowcell...
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commit | commitdiff | tree |
| 2009-09-19 |
Diane Trout | Put a stub species_json in, as I'd listed it in the...
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commit | commitdiff | tree |
| 2009-09-19 |
Diane Trout | Allow grabbing library information via json.
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commit | commitdiff | tree |
| 2009-09-19 |
Diane Trout | Add a /config/<fcid>/json url that returns information...
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commit | commitdiff | tree |
| 2009-09-19 |
Diane Trout | Django really wanted a 404 template.
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commit | commitdiff | tree |
| 2009-09-16 |
Diane Trout | Force addition of HTSUser object if someone is creating...
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commit | commitdiff | tree |
| 2009-09-16 |
Diane Trout | Replace some prints with logging.info messages and
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commit | commitdiff | tree |
| 2009-09-14 |
Diane Trout | Fix ticket:145 this patch includes the tar.bz2 extension...
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commit | commitdiff | tree |
| 2009-09-11 |
Diane Trout | Apparently I should've rendered the emails in plain...
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commit | commitdiff | tree |
| 2009-09-11 |
Diane Trout | None is better than a baddly munged string for when...
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commit | commitdiff | tree |
| 2009-09-10 |
Diane Trout | Don't crash if there are no lane result summary entries...
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commit | commitdiff | tree |
| 2009-09-10 |
Diane Trout | Report if the Summary.htm file is missing the Lane...
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commit | commitdiff | tree |
| 2009-09-10 |
Diane Trout | Remove spurious pring debugging statements as they...
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commit | commitdiff | tree |
| 2009-09-02 |
Diane Trout | remove spurious debug print statement
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commit | commitdiff | tree |
| 2009-09-01 |
Diane Trout | Report who the site managers are for the BCC
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commit | commitdiff | tree |
| 2009-08-22 |
Diane Trout | Now adding a user adds the key linking the htsuser...
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commit | commitdiff | tree |
| 2009-08-20 |
Diane Trout | Implement a send started email feature.
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commit | commitdiff | tree |
| 2009-08-20 |
Diane Trout | Reorder imports in model to make me happy.
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commit | commitdiff | tree |
| 2009-08-19 |
Diane Trout | Use hasattr instead of checking for django version...
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commit | commitdiff | tree |
| 2009-08-19 |
Diane Trout | Forgot to update one request to request.REQUEST variable...
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commit | commitdiff | tree |
| 2009-08-19 |
Diane Trout | Convert stanford/hudson alpha's updStatus to work with...
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commit | commitdiff | tree |
| 2009-08-18 |
Diane Trout | Update hudson alpha's eland config file generator to...
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commit | commitdiff | tree |
| 2009-08-18 |
Diane Trout | Update eland_config generator to work with the new...
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commit | commitdiff | tree |
| 2009-08-18 |
Diane Trout | Update Rami's flowcell report to work with our new...
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commit | commitdiff | tree |
| 2009-08-18 |
Diane Trout | Add a custom (inherited) user object named HTSUser...
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commit | commitdiff | tree |
| 2009-08-18 |
Diane Trout | Fix code where the python str() function had been overridden...
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commit | commitdiff | tree |
| 2009-08-12 |
Diane Trout | Converted Brandon's scripts into a single python script...
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commit | commitdiff | tree |
| 2009-08-12 |
Diane Trout | Move Brandon's upgrade script in with all the other...
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commit | commitdiff | tree |
| 2009-07-23 |
Diane Trout | ReadPreps can also use the netcopy complete flags which...
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commit | commitdiff | tree |
| 2009-07-21 |
Diane Trout | Allow specifying the we're finished sequencing file...
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commit | commitdiff | tree |
| 2009-07-01 |
Diane Trout | Add LibraryType option, (this will probably require...
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commit | commitdiff | tree |
| 2009-07-01 |
Diane Trout | Change the cluster station default to the current working...
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commit | commitdiff | tree |
| 2009-06-30 |
Diane Trout | Allow cellline and conditition to be blank [ticket...
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commit | commitdiff | tree |
| 2009-06-30 |
Diane Trout | Provide a dummy eland result lane class if there's...
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commit | commitdiff | tree |
| 2009-06-23 |
Diane Trout | The url validation code wasn't working on python2.4
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commit | commitdiff | tree |
| 2009-06-20 |
Diane Trout | Send the specific directory that needs to be copied...
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commit | commitdiff | tree |
| 2009-06-19 |
Diane Trout | I started using ResultLane, so stop treating it like...
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commit | commitdiff | tree |
| 2009-06-17 |
Diane Trout | Add support for extracting data out of Illumina's new...
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commit | commitdiff | tree |
| 2009-06-17 |
Diane Trout | Add a hack to add a frontend section if not present
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commit | commitdiff | tree |
| 2009-06-17 |
Diane Trout | Loading really old run xml files caused the website...
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commit | commitdiff | tree |
| 2009-06-17 |
Diane Trout | Ignore *.py[co~] files to make svn status happier
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commit | commitdiff | tree |
| 2009-06-17 |
Diane Trout | Add stub uuid function to make this module import when...
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commit | commitdiff | tree |
| 2009-06-17 |
Diane Trout | remove spurious debug print statements
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commit | commitdiff | tree |
| 2009-06-16 |
Diane Trout | The error being thrown by benderjab changed slightly.
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commit | commitdiff | tree |
| 2009-06-16 |
Diane Trout | Split rsync initialization out of run so we can test
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commit | commitdiff | tree |
| 2009-06-16 |
Diane Trout | Fixed a couple of problems.
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commit | commitdiff | tree |
| 2009-06-16 |
Diane Trout | Update test copier code for the changes in the copier...
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commit | commitdiff | tree |
| 2009-06-15 |
Diane Trout | Allow searching by library name on the experiments...
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commit | commitdiff | tree |
| 2009-06-10 |
Diane Trout | Scan more than one rsync repository for directory trees...
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commit | commitdiff | tree |
| 2009-06-09 |
Diane Trout | Add code to construct a copy url using a mapping in...
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commit | commitdiff | tree |
| 2009-06-05 |
Diane Trout | Pyinotify behaves oddly when the stdio file descriptors...
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commit | commitdiff | tree |
| 2009-06-01 |
Diane Trout | Consistently use 'watchdir' instead of 'watch_dir'...
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commit | commitdiff | tree |
| 2009-05-30 |
Diane Trout | Watch more than one directory tree for modification.
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commit | commitdiff | tree |
| 2009-05-30 |
Diane Trout | Don't print the discovered mount point.
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commit | commitdiff | tree |
| 2009-05-27 |
Diane Trout | Add a minimal test case to test a small bit of the...
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commit | commitdiff | tree |
| 2009-05-11 |
Diane Trout | More consistently split the flowcell id and status...
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commit | commitdiff | tree |
| 2009-05-11 |
Diane Trout | Fix parameter list for base class.
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commit | commitdiff | tree |
| 2009-05-06 |
Diane Trout | Update htsworkflow.util.fctracker module to work with...
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Update the django app to report "raw reads" for a sequence...
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Handle lanes that were only sequenced.
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Return NaN, NaN if a mean +/- deviation value was undefined...
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commit | commitdiff | tree |
| 2009-05-05 |
Diane Trout | Allow overriding the queued commands environment.
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commit | commitdiff | tree |
| 2009-05-01 |
Diane Trout | Add wait_for_ipar option to the spool watcher config...
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commit | commitdiff | tree |
| 2009-04-30 |
Diane Trout | Allow mapping library IDs to the library primary key
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commit | commitdiff | tree |
| 2009-04-24 |
Diane Trout | add --clean option to runfolder
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commit | commitdiff | tree |
| 2009-04-24 |
Diane Trout | Allow picking runfolder variant we should be trying...
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commit | commitdiff | tree |
| 2009-04-08 |
Diane Trout | Stop assuming that library_id == pk.
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commit | commitdiff | tree |
| 2009-04-04 |
Diane Trout | Don't crash if we can't find the flowcell run xml file
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commit | commitdiff | tree |
| 2009-04-04 |
Diane Trout | Display the affiliations on the public library detail...
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commit | commitdiff | tree |
| 2009-04-01 |
Diane Trout | Show the "Amplified from sample" as the parent library...
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | Use the image directory name to detect what type of...
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | Don't attempt to save xml for a matrix in firecrest...
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | remove some useless debugging print statements
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commit | commitdiff | tree |
| 2009-03-31 |
Diane Trout | provide an error message if no run is found with the...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | Add unit test to check that the crosstalk matrix was...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | IPAR detection is more reliable than firecrest so do...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | Allow specifying a run instead of just scanning the...
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commit | commitdiff | tree |
| 2009-03-30 |
Diane Trout | Add some logging code to report what the program is...
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commit | commitdiff | tree |
| 2009-03-28 |
Diane Trout | For pipeline 1.1rc1 or 1.3.2, look for the matrix files...
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commit | commitdiff | tree |
| 2009-03-28 |
Diane Trout | Move sample data from simulate_runfolder into testdata
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commit | commitdiff | tree |
| 2009-03-25 |
Diane Trout | Make the visiable names match how the "group" and ...
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commit | commitdiff | tree |
| 2009-03-20 |
Diane Trout | Consume output form the subprocesses
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | Actually we want fastq files, not scarf files
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | Generate a gerald config file, even if the genome is...
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | provide more options for picking how much logging info...
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | only report cwd when starting the queue monitor, not...
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commit | commitdiff | tree |
| 2009-03-18 |
Diane Trout | ignore *.py[co] files
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commit | commitdiff | tree |
| 2009-03-16 |
Diane Trout | Parse runfolders generated with IPAR 1.3 and pipeline...
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commit | commitdiff | tree |
| 2009-03-12 |
Diane Trout | Use django's FilteredSelectMultiple javascript widget...
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commit | commitdiff | tree |
| 2009-03-12 |
Diane Trout | allow searching by cluster station or sequencer name...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | We can't search linked tables. This is a problem that...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | The public library page needed to pass eland.genome_map...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | Improve support for eland searching a single fasta...
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | Use gigio's fully name instead of nickname
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commit | commitdiff | tree |
| 2009-03-10 |
Diane Trout | Let cluster_station and sequencer default to the first...
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commit | commitdiff | tree |
| 2009-03-09 |
Diane Trout | replace % with %% in the library names, so retrieve...
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commit | commitdiff | tree |
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