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htsworkflow.git
2014-01-17 Diane TroutImplement a encoded search to json-ld wrapper. commit | commitdiff | tree | snapshot
2014-01-17 Diane Troutmake sure @vocab url has a trailing #. Its needed to... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutUse new context creation functions to attach context... commit | commitdiff | tree | snapshot
2014-01-17 Diane TroutAdd functions to create a json-ld context and add names... commit | commitdiff | tree | snapshot
2014-01-15 Diane TroutUtility class for accessing ENCODE3's submit / data... commit | commitdiff | tree | snapshot
2014-01-15 Diane TroutAdapter to use PyLD's json-ld parser to add triples... commit | commitdiff | tree | snapshot
2014-01-15 Diane Troutremove some trailing whitespace commit | commitdiff | tree | snapshot
2014-01-15 Diane Troutremove some trailing whitespace commit | commitdiff | tree | snapshot
2014-01-15 Diane TroutAdd option to get_model to disable RDF graph context. commit | commitdiff | tree | snapshot
2014-01-08 Diane TroutIgnore kdevelop & kate project files. commit | commitdiff | tree | snapshot
2014-01-08 Diane TroutRename stripNamespace strip_namespace commit | commitdiff | tree | snapshot
2013-12-23 Diane TroutMerge branch 'master' of mus.cacr.caltech.edu:htsworkflow commit | commitdiff | tree | snapshot
2013-12-23 Diane Troutupdate settings for new location of WSGI_APPLICATION... commit | commitdiff | tree | snapshot
2013-12-23 Diane Troutfix quote typos with the {% static %} template tag commit | commitdiff | tree | snapshot
2013-12-23 Diane TroutMove wsgi into the actual project root. commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutremove some test code debugging print statements commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate WSGI_APPLICATION to point to the updated locatio... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutInventory works, even though its was hidden between... commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutmove an example result directory into git and use it... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutMerge branch 'django1.4' commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate requirements to require diango 1.6 commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutStart simplyfing settings by using from settings_local... commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutadd new wsgi.py driver commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate templates to consistently use {% static %} inste... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutMove loading DTD into a function as the call caused... commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutmove django imports around, change one function call... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutUpdate exception caught for newer django? commit | commitdiff | tree | snapshot
2013-12-17 Diane Troutuse url function call for url definition instead of... commit | commitdiff | tree | snapshot
2013-12-17 Diane TroutMove use of settings default into the function instead... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutUpdate manage script to django 1.6 commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutBeing able to filter on paired end runs might be useful commit | commitdiff | tree | snapshot
2013-12-10 Diane Troutremove deprecated module django.contrib.databrowse commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutWith 1.6 boolean field changed to default Null, so... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutDjango 1.6 is pickier about enforcing referential integrity commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutFix urls patterns import to be compatible with django 1.6 commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-10 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-09 Diane TroutAdd new paired library types to our hackish list for... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAttempt to be robust to not having an alignment in... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAttempt to be robust to not having an alignment in... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... commit | commitdiff | tree | snapshot
2013-12-06 Diane TroutAfter implementing proper tests get a working implement... commit | commitdiff | tree | snapshot
2013-12-05 Diane Troutfix typo commit | commitdiff | tree | snapshot
2013-12-05 Diane Troutfix typo commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutUpdate for UCSC's validate manifest 1.7 commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutProvide reporting of what command failed when bigWigInf... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutRecent IPAR xml config blocks include the runfolder... commit | commitdiff | tree | snapshot
2013-12-05 Diane TroutAdd a way to report what url was failing commit | commitdiff | tree | snapshot
2013-12-02 Diane TroutCatch and report another class of exception commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutMerge remote-tracking branch 'brisby/django1.4' into... commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutPass additional information to the trackhub. commit | commitdiff | tree | snapshot
2013-10-21 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutMerge branch 'master' into django1.4 commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutAdd command line feature to srf command commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutDynamically respond to the number of lanes. commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutFix typo. commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-10-17 Diane TroutImplement a wrapper around bigWigInfo to report bigWig... commit | commitdiff | tree | snapshot
2013-10-11 Diane TroutMake it possible to set a label on a track. commit | commitdiff | tree | snapshot
2013-10-09 Diane Troutadd replaces / replace_reason generation to trackhub... commit | commitdiff | tree | snapshot
2013-10-09 Diane Troutremove spurious newline commit | commitdiff | tree | snapshot
2013-10-08 Diane TroutBe more forgiving about the md5sum filename path commit | commitdiff | tree | snapshot
2013-10-08 Diane TroutAdd helpful logging information to explain missing... commit | commitdiff | tree | snapshot
2013-09-24 Diane TroutShare more code to generate result tree. commit | commitdiff | tree | snapshot
2013-08-12 Diane TroutUpdate test data for renamed library type. commit | commitdiff | tree | snapshot
2013-08-10 Diane TroutAdd sortOrder and filtering parameters to the trackhub. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutMove version finding code into the util directory. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutTest changes to submission code. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutGenerate manifest.txt files for submitting to ENCODE3. commit | commitdiff | tree | snapshot
2013-07-22 Diane Troutturtle writing improvements. commit | commitdiff | tree | snapshot
2013-07-22 Diane TroutAdd a generator that returns analysis nodes from a... commit | commitdiff | tree | snapshot
2013-07-20 Diane TroutAdd python namespace for encode3 RDF namespace commit | commitdiff | tree | snapshot
2013-07-18 Diane TroutAdd function to list the names for submissions from... commit | commitdiff | tree | snapshot
2013-07-17 Diane TroutAdd function to parse scp / ssh style URLs. commit | commitdiff | tree | snapshot
2013-07-16 Diane TroutDeleting commented out code. commit | commitdiff | tree | snapshot
2013-07-08 Diane TroutUpdate test to work with species -> species_name rename. commit | commitdiff | tree | snapshot
2013-07-03 Diane TroutGenerate manifest files for ENCODE3 commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutMerge branch 'django1.4' of mus.cacr.caltech.edu:htswor... commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutAdd the option to copy tree in addition to making a... commit | commitdiff | tree | snapshot
2013-07-01 Diane TroutInitial attempt to start generating trackHubs and manif... commit | commitdiff | tree | snapshot
2013-07-01 Diane Trouttype checking more detailed than Literal doesn't work... commit | commitdiff | tree | snapshot
2013-06-28 Diane TroutAdd option to copy source files for a submission. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutFurther improve reliability of make_tree_from. commit | commitdiff | tree | snapshot
2013-06-18 Diane Troutcopy_tree_from wasn't actually making any symlinks. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutUpdate tests for new version of redland rdf lib. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutRemove deprecated adminmedia template tag from loader. commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutReplace deprecated django.contrib adminmedia with stati... commit | commitdiff | tree | snapshot
2013-06-18 Diane TroutUse proper User model import. commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutPreliminary implementation of trackDb generation. commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutForgot to import an exception I used commit | commitdiff | tree | snapshot
2013-02-01 Diane TroutMake a sample key list to go along with our lane list commit | commitdiff | tree | snapshot
2013-01-16 dianeAdd more entries to genome version detection map. commit | commitdiff | tree | snapshot
2013-01-16 Diane TroutSupport scanning HiSeq runs with multiple analyses. commit | commitdiff | tree | snapshot
2013-01-16 Diane TroutThrown an exception if we can't parse base calling... commit | commitdiff | tree | snapshot
2013-01-15 Diane TroutStart making documentation for htsworkflow. commit | commitdiff | tree | snapshot
2013-01-09 Diane TroutA better resolution to a possible circular dependency. commit | commitdiff | tree | snapshot
2013-01-09 Diane TroutDon't accidentally transform an object into a tuple. commit | commitdiff | tree | snapshot
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