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seperate qt unittests into subdirectories
[mussa.git]
/
alg
/
2007-03-30
Diane Trout
incorporate drawable and annotations
tree
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commitdiff
2007-03-30
Diane Trout
create class to hold drawing information
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commitdiff
2007-03-30
Diane Trout
create a metadata holding class
tree
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commitdiff
2007-03-27
Diane Trout
Handle subseq when the parent is on the minus strand
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commitdiff
2007-03-24
Diane Trout
move strand into seqspan
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commitdiff
2007-03-21
Diane Trout
Missed part of "Store Sequence sequence location in...
tree
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commitdiff
2007-03-21
Diane Trout
Move alphabet type into SeqString
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commitdiff
2007-03-20
Diane Trout
Store Sequence sequence location in a shared_ptr class
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commitdiff
2007-03-08
Diane Trout
add a useful comment
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commitdiff
2007-02-20
Diane Trout
more error messages for loading an annotation.
tree
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commitdiff
2007-02-14
Brandon King
Added newline char to end of line (remove compile warning)
tree
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commitdiff
2007-01-05
Diane Trout
add some newlines at the end of some of our files
tree
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commitdiff
2007-01-04
Diane Trout
conditionally build the paircomp tests
tree
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commitdiff
2007-01-04
Diane Trout
paircomp used the string find_first_not_of
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commitdiff
2007-01-04
Diane Trout
split unittests into seperate executables
tree
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commitdiff
2006-12-14
Diane Trout
len(mussa.paths()) should equal the number of found...
tree
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commitdiff
2006-12-05
Diane Trout
provide python interpreter for mussa qui via a seperate...
tree
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commitdiff
2006-11-29
Diane Trout
add python interface to seqcomp
tree
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commitdiff
2006-11-22
Diane Trout
Finish off setting sequence offset user interface
tree
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commitdiff
2006-11-17
Diane Trout
more fs::native for user supplied paths
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commitdiff
2006-10-30
Diane Trout
include filename in unparsable annotation error message
tree
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commitdiff
2006-10-30
Diane Trout
report filename for invalid fasta files
tree
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commitdiff
2006-10-28
Diane Trout
compute the correct starting window size
tree
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commitdiff
2006-10-27
Diane Trout
implement set window state
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commitdiff
2006-10-26
Diane Trout
add copy sequence as string option
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commitdiff
2006-10-26
Diane Trout
display number of basepairs copied
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commitdiff
2006-10-20
Diane Trout
add nl to end of 3 files
tree
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commitdiff
2006-10-20
Diane Trout
copy motifs to a new subanalysis
tree
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commitdiff
2006-10-19
Diane Trout
fix motif loader under release build
tree
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commitdiff
2006-10-19
Diane Trout
Sequence::rev_comp works on subsequences
tree
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commitdiff
2006-10-18
Diane Trout
add to_upper_case to some sequence unittests
tree
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commitdiff
2006-10-17
Diane Trout
be more forging of user provided file names
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commitdiff
2006-10-17
Diane Trout
remove old code
tree
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commitdiff
2006-10-17
Diane Trout
changing motifs should make the analysis dirty
tree
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commitdiff
2006-10-17
Diane Trout
force loaded sequence to uppercase
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commitdiff
2006-10-17
Diane Trout
don't link against X11 on OS X
tree
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commitdiff
2006-10-14
Diane Trout
don't seqcomp sequences that are too small
tree
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commitdiff
2006-10-14
Diane Trout
add operator< to ConservedPath
tree
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commitdiff
2006-10-13
Brandon King
Save to image fix (ticket:96)
tree
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commitdiff
2006-10-13
Diane Trout
save motifs with the analysis
tree
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commitdiff
2006-10-12
Diane Trout
better glyph offset computation
tree
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commitdiff
2006-10-12
Diane Trout
does createLocalAlignment work for a 3 way?
tree
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commitdiff
2006-10-11
Diane Trout
add Mussa::save_motif()
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commitdiff
2006-10-11
Diane Trout
throw errors when spirit parsing fails
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commitdiff
2006-10-11
Diane Trout
a title of path("/my/silly/path") doesn't work on windows
tree
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commitdiff
2006-10-11
Diane Trout
use lines if a quad would be smaller than a pixel
tree
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commitdiff
2006-10-10
Diane Trout
implement alphabet for sequence
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commitdiff
2006-10-05
Diane Trout
length 1 segments should be drawn as lines
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commitdiff
2006-10-05
Diane Trout
draw link lines with a width
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commitdiff
2006-10-04
Diane Trout
add --motifs
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commitdiff
2006-10-04
Diane Trout
fixes for Mussa::load_motif
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commitdiff
2006-10-04
Diane Trout
colors should default to being visible
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commitdiff
2006-10-03
Diane Trout
Add window titles
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commitdiff
2006-06-15
Diane Trout
fix wrong parent for scrollable_browser
tree
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commitdiff
2006-10-03
Diane Trout
Death to stupid mussa pointers
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commitdiff
2006-09-19
Diane Trout
catch possible segfault with get_sequence()
tree
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commitdiff
2006-09-15
Diane Trout
use the loaded analysis path as the default save path
tree
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commitdiff
2006-09-15
Diane Trout
keep track of a subsequences parent
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commitdiff
2006-09-15
Diane Trout
report our "start/stop" location on a subsequence
tree
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commitdiff
2006-09-15
Diane Trout
use an enum instead of a bool for strandedness
tree
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commitdiff
2006-09-15
Diane Trout
make our Color class serializable
tree
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commitdiff
2006-09-14
Diane Trout
make sure we show the start of our sequence name
tree
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commitdiff
2006-09-14
Diane Trout
Implement an optional name in the motif parser
tree
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commitdiff
2006-09-12
Diane Trout
implement "typical" save and close conventions.
tree
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commitdiff
2006-09-12
Diane Trout
track where our analysis is saved and if the analysis...
tree
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commitdiff
2006-09-12
Diane Trout
add seq_forward
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commitdiff
2006-09-09
Diane Trout
make really sure load_mupa has a file to parse.
tree
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commitdiff
2006-09-08
Diane Trout
subsequences now use offsets into the shared_ptr seq_string
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commitdiff
2006-09-08
Diane Trout
catch a few more potential unchecked shared_ptr derefer...
tree
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commitdiff
2006-09-07
Diane Trout
remove commented out string conversion
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commitdiff
2006-09-07
Diane Trout
Figured out how to serialize a shared_ptr<string>
tree
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commitdiff
2006-09-07
Diane Trout
go back to using const char * in seqcomp
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commitdiff
2006-08-30
Diane Trout
use shared_ptr to store the sequence string
tree
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commitdiff
2006-08-29
Diane Trout
put basepair alphabets into the Sequence class
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commitdiff
2006-08-29
Diane Trout
go back to sequence being its own class
tree
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commitdiff
2006-08-31
Diane Trout
need to #include <cassert> if i'm going to use asserts
tree
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commitdiff
2006-08-24
Diane Trout
start trying to figure out where the documentation is
tree
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commitdiff
2006-08-24
Diane Trout
update sequence serialization to support the xml archive
tree
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commitdiff
2006-08-23
Diane Trout
Allow changing the name for a sequence in the sequence...
tree
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commitdiff
2006-08-22
Diane Trout
catch the other spurious class decoration
tree
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commitdiff
2006-08-22
Diane Trout
remove unnecessary class member decoration
tree
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commitdiff
2006-08-12
Diane Trout
Fix merge issues with the win32 library patch
tree
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commitdiff
2006-08-12
Brandon King
Reorder libraries for win32
tree
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commitdiff
2006-08-12
Brandon King
Tell unittests to use native file convention for EXAMPL...
tree
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commitdiff
2006-08-10
Diane Trout
Try alpha blending the conservation paths
tree
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commitdiff
2006-08-10
Diane Trout
Let the annotation parser skip html tags
tree
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commitdiff
2006-08-09
Diane Trout
Implement serialize for sequence
tree
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commitdiff
2006-08-09
Diane Trout
start breaking save out from Mussa::analyze()
tree
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commitdiff
2006-08-09
Diane Trout
Add documentation about Mussa::soft_threshold
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commitdiff
2006-08-09
Diane Trout
add dirty flag
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commitdiff
2006-08-09
Diane Trout
change from cout to clog in some commented out debuggin...
tree
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commitdiff
2006-07-29
Diane Trout
set mussa analysis name in MussaSetupWidget
tree
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commitdiff
2006-07-28
Diane Trout
Use CMAKE_BINARY_DIR instead of the very wrong MUSSA_BI...
tree
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commitdiff
2006-07-27
Diane Trout
add annot and motif classes to python interface
tree
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commitdiff
2006-07-21
Diane Trout
Build universal binaries on OS X
tree
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commitdiff
2006-07-13
Diane Trout
start the trivial sequence filter
tree
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commitdiff
2006-07-01
Diane Trout
SequenceLocation was being intialized with left,right
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commitdiff
2006-07-01
Diane Trout
make sure subsequences have a species name
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commitdiff
2006-07-01
Diane Trout
Implement UI for subanalysis mode
tree
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commitdiff
2006-06-30
Diane Trout
fix boost::python sequence interface
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commitdiff
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