projects
/
mussa.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
add implementation for save motif menu item
2006-10-12
Diane Trout
add implementation for save motif menu item
commit
|
commitdiff
|
tree
2006-10-12
Diane Trout
Make help a bit more reliable
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
lookup python code with c++
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
Validate motif input
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
add Mussa::save_motif()
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
throw errors when spirit parsing fails
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
use spinboxes for the setup analysis dialog
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
a title of path("/my/silly/path") doesn't work on windows
commit
|
commitdiff
|
tree
2006-10-11
Diane Trout
use lines if a quad would be smaller than a pixel
commit
|
commitdiff
|
tree
2006-10-10
Diane Trout
initialize the motif_editor with analysis motifs
commit
|
commitdiff
|
tree
2006-10-10
Diane Trout
implement alphabet for sequence
commit
|
commitdiff
|
tree
2006-10-05
Diane Trout
length 1 segments should be drawn as lines
commit
|
commitdiff
|
tree
2006-10-05
Diane Trout
draw link lines with a width
commit
|
commitdiff
|
tree
2006-10-04
Diane Trout
add --motifs
commit
|
commitdiff
|
tree
2006-10-04
Diane Trout
trigger motif update from loadMotifList
commit
|
commitdiff
|
tree
2006-10-04
Diane Trout
fixes for Mussa::load_motif
commit
|
commitdiff
|
tree
2006-10-04
Diane Trout
colors should default to being visible
commit
|
commitdiff
|
tree
2006-10-03
Diane Trout
Add window titles
commit
|
commitdiff
|
tree
2006-06-15
Diane Trout
fix wrong parent for scrollable_browser
commit
|
commitdiff
|
tree
2006-10-03
Diane Trout
Add ReadOnly ThresholdWidget to MussaAlignedWindow
commit
|
commitdiff
|
tree
2006-10-03
Diane Trout
Use pointers in ThresholdWidget
commit
|
commitdiff
|
tree
2006-10-03
Diane Trout
Allow MussaAlignedWindows to create subanalyses
commit
|
commitdiff
|
tree
2006-10-03
Diane Trout
Death to stupid mussa pointers
commit
|
commitdiff
|
tree
2006-10-02
Diane Trout
add updateTitle
commit
|
commitdiff
|
tree
2006-10-02
Diane Trout
Make MussaWindow UI objects pointers
commit
|
commitdiff
|
tree
2006-09-29
Diane Trout
better motif editor
commit
|
commitdiff
|
tree
2006-09-21
Diane Trout
If we don't need any python link libraries don't produce...
commit
|
commitdiff
|
tree
2006-09-19
Diane Trout
catch possible segfault with get_sequence()
commit
|
commitdiff
|
tree
2006-09-18
Diane Trout
need a cassert
commit
|
commitdiff
|
tree
2006-09-18
Diane Trout
Remember to include Platform to get PYTHON_LINK_LIBARIES
commit
|
commitdiff
|
tree
2006-09-18
Diane Trout
ask python what libraries we need to link with
commit
|
commitdiff
|
tree
2006-09-16
Diane Trout
Load saved analysis can open new windows
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
if you need to do a save as, you really don't need...
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
remember the last directory we were did something in
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
remove reporting the current path from the about box
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
use the loaded analysis path as the default save path
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
always save
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
keep track of a subsequences parent
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
report our "start/stop" location on a subsequence
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
use an enum instead of a bool for strandedness
commit
|
commitdiff
|
tree
2006-09-15
Diane Trout
make our Color class serializable
commit
|
commitdiff
|
tree
2006-09-14
Diane Trout
do a better job of erasing the browser sidebars
commit
|
commitdiff
|
tree
2006-09-14
Diane Trout
make sure we show the start of our sequence name
commit
|
commitdiff
|
tree
2006-09-14
Diane Trout
Implement an optional name in the motif parser
commit
|
commitdiff
|
tree
2006-09-13
Diane Trout
MussaSetupDialog remembers previous load directory
commit
|
commitdiff
|
tree
2006-09-13
Diane Trout
default saveAnalysisAs to users home directory
commit
|
commitdiff
|
tree
2006-09-12
Diane Trout
warn the user if we're going to replace an analysis
commit
|
commitdiff
|
tree
2006-09-12
Diane Trout
implement "typical" save and close conventions.
commit
|
commitdiff
|
tree
2006-09-12
Diane Trout
track where our analysis is saved and if the analysis...
commit
|
commitdiff
|
tree
2006-09-12
Diane Trout
implement analysis save as dialog
commit
|
commitdiff
|
tree
2006-09-12
Diane Trout
add seq_forward
commit
|
commitdiff
|
tree
2006-09-09
Diane Trout
make really sure load_mupa has a file to parse.
commit
|
commitdiff
|
tree
2006-09-08
Diane Trout
subsequences now use offsets into the shared_ptr seq_string
commit
|
commitdiff
|
tree
2006-09-08
Diane Trout
catch a few more potential unchecked shared_ptr dereferences.
commit
|
commitdiff
|
tree
2006-09-07
Diane Trout
remove commented out string conversion
commit
|
commitdiff
|
tree
2006-09-07
Diane Trout
Figured out how to serialize a shared_ptr<string>
commit
|
commitdiff
|
tree
2006-09-07
Diane Trout
go back to using const char * in seqcomp
commit
|
commitdiff
|
tree
2006-08-30
Diane Trout
use shared_ptr to store the sequence string
commit
|
commitdiff
|
tree
2006-08-29
Diane Trout
put basepair alphabets into the Sequence class
commit
|
commitdiff
|
tree
2006-08-29
Diane Trout
go back to sequence being its own class
commit
|
commitdiff
|
tree
2006-08-31
Diane Trout
There's something wrong with the Qt tests, skip for...
commit
|
commitdiff
|
tree
2006-08-31
Diane Trout
fedora needs -lutil for python to build
commit
|
commitdiff
|
tree
2006-08-31
Diane Trout
need to #include <cassert> if i'm going to use asserts
commit
|
commitdiff
|
tree
2006-08-29
Diane Trout
forgot namespace declaration on some conditional code
commit
|
commitdiff
|
tree
2006-08-24
Diane Trout
start trying to figure out where the documentation is
commit
|
commitdiff
|
tree
2006-08-24
Diane Trout
update sequence serialization to support the xml archive
commit
|
commitdiff
|
tree
2006-08-23
Diane Trout
Allow changing the name for a sequence in the sequence...
commit
|
commitdiff
|
tree
2006-08-22
Diane Trout
catch the other spurious class decoration
commit
|
commitdiff
|
tree
2006-08-22
Diane Trout
remove unnecessary class member decoration
commit
|
commitdiff
|
tree
2006-08-12
Diane Trout
Fix merge issues with the win32 library patch
commit
|
commitdiff
|
tree
2006-08-11
Diane Trout
Update SequenceDescription to have signal/slots
commit
|
commitdiff
|
tree
2006-08-11
Diane Trout
do a better job of grouping seqbrowser sidebar information.
commit
|
commitdiff
|
tree
2006-08-10
Diane Trout
Try alpha blending the conservation paths
commit
|
commitdiff
|
tree
2006-08-10
Diane Trout
remove the useless hide motif button.
commit
|
commitdiff
|
tree
2006-08-10
Diane Trout
Let the annotation parser skip html tags
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
Implement serialize for sequence
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
start breaking save out from Mussa::analyze()
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
Add documentation about Mussa::soft_threshold
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
remove mck3test.museq and .muway
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
Add serialization library to FindBoost
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
add dirty flag
commit
|
commitdiff
|
tree
2006-08-09
Diane Trout
change from cout to clog in some commented out debugging...
commit
|
commitdiff
|
tree
2006-07-29
Diane Trout
set mussa analysis name in MussaSetupWidget
commit
|
commitdiff
|
tree
2006-07-28
Diane Trout
update osxdist to point to qt 4.1.4
commit
|
commitdiff
|
tree
2006-07-28
Diane Trout
fix ticket:115 display sequences in order added
commit
|
commitdiff
|
tree
2006-07-28
Diane Trout
Use CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR
commit
|
commitdiff
|
tree
2006-07-28
Diane Trout
Since building with cmake 2.2 didn't work up the required...
commit
|
commitdiff
|
tree
2006-07-28
Diane Trout
set current doc url
commit
|
commitdiff
|
tree
2006-07-28
Diane Trout
Implement a convienence class for accessing python...
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
rename glseq.width to glseq.size in gl.py
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
update gl.py to show how to add an annotation
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
add annot and motif classes to python interface
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
update gl.py glut example code
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
use QT_QTASSISTANT_FOUND when detecting QtAssistant
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
fix problems instantiating mussa.GlSequence
commit
|
commitdiff
|
tree
2006-07-27
Diane Trout
make it possible to build mussa with python
commit
|
commitdiff
|
tree
2006-07-26
Diane Trout
Use BOOST_PYTHON_LIBRARY as python library guard
commit
|
commitdiff
|
tree
2006-07-22
Diane Trout
universal ld wrapper script
commit
|
commitdiff
|
tree
2006-07-21
Diane Trout
Build universal binaries on OS X
commit
|
commitdiff
|
tree
2006-07-15
Diane Trout
Provide an app icon on OS X
commit
|
commitdiff
|
tree
next