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2006-10-17	Diane Trout	more python interface to Sequence	commit \| commitdiff \| tree
2006-10-17	Diane Trout	force loaded sequence to uppercase	commit \| commitdiff \| tree
2006-10-17	Diane Trout	validate app bundle before shipping	commit \| commitdiff \| tree
2006-10-17	Diane Trout	don't link against X11 on OS X	commit \| commitdiff \| tree
2006-10-14	Diane Trout	don't seqcomp sequences that are too small	commit \| commitdiff \| tree
2006-10-14	Diane Trout	add operator< to ConservedPath	commit \| commitdiff \| tree
2006-10-13	Diane Trout	save motifs with the analysis	commit \| commitdiff \| tree
2006-10-13	Diane Trout	pass default_dir around	commit \| commitdiff \| tree
2006-10-13	Diane Trout	change default_dir to a QDir	commit \| commitdiff \| tree
2006-10-12	Diane Trout	cleanup image save dialog aesthetics	commit \| commitdiff \| tree
2006-10-12	Diane Trout	tabs are of the devil	commit \| commitdiff \| tree
2006-10-12	Diane Trout	Fix initialization of QtAssistant	commit \| commitdiff \| tree
2006-10-12	Diane Trout	better glyph offset computation	commit \| commitdiff \| tree
2006-10-12	Diane Trout	does createLocalAlignment work for a 3 way?	commit \| commitdiff \| tree
2006-10-12	Diane Trout	add implementation for save motif menu item	commit \| commitdiff \| tree
2006-10-12	Diane Trout	Make help a bit more reliable	commit \| commitdiff \| tree
2006-10-11	Diane Trout	lookup python code with c++	commit \| commitdiff \| tree
2006-10-11	Diane Trout	Validate motif input	commit \| commitdiff \| tree
2006-10-11	Diane Trout	add Mussa::save_motif()	commit \| commitdiff \| tree
2006-10-11	Diane Trout	throw errors when spirit parsing fails	commit \| commitdiff \| tree
2006-10-11	Diane Trout	use spinboxes for the setup analysis dialog	commit \| commitdiff \| tree
2006-10-11	Diane Trout	a title of path("/my/silly/path") doesn't work on windows	commit \| commitdiff \| tree
2006-10-11	Diane Trout	use lines if a quad would be smaller than a pixel	commit \| commitdiff \| tree
2006-10-10	Diane Trout	initialize the motif_editor with analysis motifs	commit \| commitdiff \| tree
2006-10-10	Diane Trout	implement alphabet for sequence	commit \| commitdiff \| tree
2006-10-05	Diane Trout	length 1 segments should be drawn as lines	commit \| commitdiff \| tree
2006-10-05	Diane Trout	draw link lines with a width	commit \| commitdiff \| tree
2006-10-04	Diane Trout	add --motifs	commit \| commitdiff \| tree
2006-10-04	Diane Trout	trigger motif update from loadMotifList	commit \| commitdiff \| tree
2006-10-04	Diane Trout	fixes for Mussa::load_motif	commit \| commitdiff \| tree
2006-10-04	Diane Trout	colors should default to being visible	commit \| commitdiff \| tree
2006-10-03	Diane Trout	Add window titles	commit \| commitdiff \| tree
2006-06-15	Diane Trout	fix wrong parent for scrollable_browser	commit \| commitdiff \| tree
2006-10-03	Diane Trout	Add ReadOnly ThresholdWidget to MussaAlignedWindow	commit \| commitdiff \| tree
2006-10-03	Diane Trout	Use pointers in ThresholdWidget	commit \| commitdiff \| tree
2006-10-03	Diane Trout	Allow MussaAlignedWindows to create subanalyses	commit \| commitdiff \| tree
2006-10-03	Diane Trout	Death to stupid mussa pointers	commit \| commitdiff \| tree
2006-10-02	Diane Trout	add updateTitle	commit \| commitdiff \| tree
2006-10-02	Diane Trout	Make MussaWindow UI objects pointers	commit \| commitdiff \| tree
2006-09-29	Diane Trout	better motif editor	commit \| commitdiff \| tree
2006-09-21	Diane Trout	If we don't need any python link libraries don't produce...	commit \| commitdiff \| tree
2006-09-19	Diane Trout	catch possible segfault with get_sequence()	commit \| commitdiff \| tree
2006-09-18	Diane Trout	need a cassert	commit \| commitdiff \| tree
2006-09-18	Diane Trout	Remember to include Platform to get PYTHON_LINK_LIBARIES	commit \| commitdiff \| tree
2006-09-18	Diane Trout	ask python what libraries we need to link with	commit \| commitdiff \| tree
2006-09-16	Diane Trout	Load saved analysis can open new windows	commit \| commitdiff \| tree
2006-09-15	Diane Trout	if you need to do a save as, you really don't need...	commit \| commitdiff \| tree
2006-09-15	Diane Trout	remember the last directory we were did something in	commit \| commitdiff \| tree
2006-09-15	Diane Trout	remove reporting the current path from the about box	commit \| commitdiff \| tree
2006-09-15	Diane Trout	use the loaded analysis path as the default save path	commit \| commitdiff \| tree
2006-09-15	Diane Trout	always save	commit \| commitdiff \| tree
2006-09-15	Diane Trout	keep track of a subsequences parent	commit \| commitdiff \| tree
2006-09-15	Diane Trout	report our "start/stop" location on a subsequence	commit \| commitdiff \| tree
2006-09-15	Diane Trout	use an enum instead of a bool for strandedness	commit \| commitdiff \| tree
2006-09-15	Diane Trout	make our Color class serializable	commit \| commitdiff \| tree
2006-09-14	Diane Trout	do a better job of erasing the browser sidebars	commit \| commitdiff \| tree
2006-09-14	Diane Trout	make sure we show the start of our sequence name	commit \| commitdiff \| tree
2006-09-14	Diane Trout	Implement an optional name in the motif parser	commit \| commitdiff \| tree
2006-09-13	Diane Trout	MussaSetupDialog remembers previous load directory	commit \| commitdiff \| tree
2006-09-13	Diane Trout	default saveAnalysisAs to users home directory	commit \| commitdiff \| tree
2006-09-12	Diane Trout	warn the user if we're going to replace an analysis	commit \| commitdiff \| tree
2006-09-12	Diane Trout	implement "typical" save and close conventions.	commit \| commitdiff \| tree
2006-09-12	Diane Trout	track where our analysis is saved and if the analysis...	commit \| commitdiff \| tree
2006-09-12	Diane Trout	implement analysis save as dialog	commit \| commitdiff \| tree
2006-09-12	Diane Trout	add seq_forward	commit \| commitdiff \| tree
2006-09-09	Diane Trout	make really sure load_mupa has a file to parse.	commit \| commitdiff \| tree
2006-09-08	Diane Trout	subsequences now use offsets into the shared_ptr seq_string	commit \| commitdiff \| tree
2006-09-08	Diane Trout	catch a few more potential unchecked shared_ptr dereferences.	commit \| commitdiff \| tree
2006-09-07	Diane Trout	remove commented out string conversion	commit \| commitdiff \| tree
2006-09-07	Diane Trout	Figured out how to serialize a shared_ptr<string>	commit \| commitdiff \| tree
2006-09-07	Diane Trout	go back to using const char * in seqcomp	commit \| commitdiff \| tree
2006-08-30	Diane Trout	use shared_ptr to store the sequence string	commit \| commitdiff \| tree
2006-08-29	Diane Trout	put basepair alphabets into the Sequence class	commit \| commitdiff \| tree
2006-08-29	Diane Trout	go back to sequence being its own class	commit \| commitdiff \| tree
2006-08-31	Diane Trout	There's something wrong with the Qt tests, skip for...	commit \| commitdiff \| tree
2006-08-31	Diane Trout	fedora needs -lutil for python to build	commit \| commitdiff \| tree
2006-08-31	Diane Trout	need to #include <cassert> if i'm going to use asserts	commit \| commitdiff \| tree
2006-08-29	Diane Trout	forgot namespace declaration on some conditional code	commit \| commitdiff \| tree
2006-08-24	Diane Trout	start trying to figure out where the documentation is	commit \| commitdiff \| tree
2006-08-24	Diane Trout	update sequence serialization to support the xml archive	commit \| commitdiff \| tree
2006-08-23	Diane Trout	Allow changing the name for a sequence in the sequence...	commit \| commitdiff \| tree
2006-08-22	Diane Trout	catch the other spurious class decoration	commit \| commitdiff \| tree
2006-08-22	Diane Trout	remove unnecessary class member decoration	commit \| commitdiff \| tree
2006-08-12	Diane Trout	Fix merge issues with the win32 library patch	commit \| commitdiff \| tree
2006-08-11	Diane Trout	Update SequenceDescription to have signal/slots	commit \| commitdiff \| tree
2006-08-11	Diane Trout	do a better job of grouping seqbrowser sidebar information.	commit \| commitdiff \| tree
2006-08-10	Diane Trout	Try alpha blending the conservation paths	commit \| commitdiff \| tree
2006-08-10	Diane Trout	remove the useless hide motif button.	commit \| commitdiff \| tree
2006-08-10	Diane Trout	Let the annotation parser skip html tags	commit \| commitdiff \| tree
2006-08-09	Diane Trout	Implement serialize for sequence	commit \| commitdiff \| tree
2006-08-09	Diane Trout	start breaking save out from Mussa::analyze()	commit \| commitdiff \| tree
2006-08-09	Diane Trout	Add documentation about Mussa::soft_threshold	commit \| commitdiff \| tree
2006-08-09	Diane Trout	remove mck3test.museq and .muway	commit \| commitdiff \| tree
2006-08-09	Diane Trout	Add serialization library to FindBoost	commit \| commitdiff \| tree
2006-08-09	Diane Trout	add dirty flag	commit \| commitdiff \| tree
2006-08-09	Diane Trout	change from cout to clog in some commented out debugging...	commit \| commitdiff \| tree
2006-07-29	Diane Trout	set mussa analysis name in MussaSetupWidget	commit \| commitdiff \| tree
2006-07-28	Diane Trout	update osxdist to point to qt 4.1.4	commit \| commitdiff \| tree
2006-07-28	Diane Trout	fix ticket:115 display sequences in order added	commit \| commitdiff \| tree
2006-07-28	Diane Trout	Use CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR	commit \| commitdiff \| tree
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MUSSA multi-species alignment tool

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