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Make MussaWindow UI objects pointers
2006-10-02
Diane Trout
Make MussaWindow UI objects pointers
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2006-09-29
Diane Trout
better motif editor
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2006-09-21
Diane Trout
If we don't need any python link libraries don't produce...
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2006-09-19
Diane Trout
catch possible segfault with get_sequence()
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2006-09-18
Diane Trout
need a cassert
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2006-09-18
Diane Trout
Remember to include Platform to get PYTHON_LINK_LIBARIES
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2006-09-18
Diane Trout
ask python what libraries we need to link with
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2006-09-16
Diane Trout
Load saved analysis can open new windows
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2006-09-15
Diane Trout
if you need to do a save as, you really don't need...
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2006-09-15
Diane Trout
remember the last directory we were did something in
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2006-09-15
Diane Trout
remove reporting the current path from the about box
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2006-09-15
Diane Trout
use the loaded analysis path as the default save path
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2006-09-15
Diane Trout
always save
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2006-09-15
Diane Trout
keep track of a subsequences parent
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2006-09-15
Diane Trout
report our "start/stop" location on a subsequence
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2006-09-15
Diane Trout
use an enum instead of a bool for strandedness
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2006-09-15
Diane Trout
make our Color class serializable
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2006-09-14
Diane Trout
do a better job of erasing the browser sidebars
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2006-09-14
Diane Trout
make sure we show the start of our sequence name
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2006-09-14
Diane Trout
Implement an optional name in the motif parser
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2006-09-13
Diane Trout
MussaSetupDialog remembers previous load directory
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2006-09-13
Diane Trout
default saveAnalysisAs to users home directory
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2006-09-12
Diane Trout
warn the user if we're going to replace an analysis
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2006-09-12
Diane Trout
implement "typical" save and close conventions.
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2006-09-12
Diane Trout
track where our analysis is saved and if the analysis...
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2006-09-12
Diane Trout
implement analysis save as dialog
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2006-09-12
Diane Trout
add seq_forward
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2006-09-09
Diane Trout
make really sure load_mupa has a file to parse.
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2006-09-08
Diane Trout
subsequences now use offsets into the shared_ptr seq_string
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2006-09-08
Diane Trout
catch a few more potential unchecked shared_ptr dereferences.
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2006-09-07
Diane Trout
remove commented out string conversion
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2006-09-07
Diane Trout
Figured out how to serialize a shared_ptr<string>
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2006-09-07
Diane Trout
go back to using const char * in seqcomp
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2006-08-30
Diane Trout
use shared_ptr to store the sequence string
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2006-08-29
Diane Trout
put basepair alphabets into the Sequence class
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2006-08-29
Diane Trout
go back to sequence being its own class
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2006-08-31
Diane Trout
There's something wrong with the Qt tests, skip for...
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2006-08-31
Diane Trout
fedora needs -lutil for python to build
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2006-08-31
Diane Trout
need to #include <cassert> if i'm going to use asserts
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2006-08-29
Diane Trout
forgot namespace declaration on some conditional code
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2006-08-24
Diane Trout
start trying to figure out where the documentation is
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2006-08-24
Diane Trout
update sequence serialization to support the xml archive
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2006-08-23
Diane Trout
Allow changing the name for a sequence in the sequence...
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2006-08-22
Diane Trout
catch the other spurious class decoration
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2006-08-22
Diane Trout
remove unnecessary class member decoration
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2006-08-12
Diane Trout
Fix merge issues with the win32 library patch
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2006-08-11
Diane Trout
Update SequenceDescription to have signal/slots
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2006-08-11
Diane Trout
do a better job of grouping seqbrowser sidebar information.
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2006-08-10
Diane Trout
Try alpha blending the conservation paths
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2006-08-10
Diane Trout
remove the useless hide motif button.
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2006-08-10
Diane Trout
Let the annotation parser skip html tags
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2006-08-09
Diane Trout
Implement serialize for sequence
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2006-08-09
Diane Trout
start breaking save out from Mussa::analyze()
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2006-08-09
Diane Trout
Add documentation about Mussa::soft_threshold
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2006-08-09
Diane Trout
remove mck3test.museq and .muway
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2006-08-09
Diane Trout
Add serialization library to FindBoost
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2006-08-09
Diane Trout
add dirty flag
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2006-08-09
Diane Trout
change from cout to clog in some commented out debugging...
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2006-07-29
Diane Trout
set mussa analysis name in MussaSetupWidget
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2006-07-28
Diane Trout
update osxdist to point to qt 4.1.4
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2006-07-28
Diane Trout
fix ticket:115 display sequences in order added
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2006-07-28
Diane Trout
Use CMAKE_BINARY_DIR instead of the very wrong MUSSA_BINARY_DIR
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2006-07-28
Diane Trout
Since building with cmake 2.2 didn't work up the required...
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2006-07-28
Diane Trout
set current doc url
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2006-07-28
Diane Trout
Implement a convienence class for accessing python...
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2006-07-27
Diane Trout
rename glseq.width to glseq.size in gl.py
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2006-07-27
Diane Trout
update gl.py to show how to add an annotation
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2006-07-27
Diane Trout
add annot and motif classes to python interface
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2006-07-27
Diane Trout
update gl.py glut example code
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2006-07-27
Diane Trout
use QT_QTASSISTANT_FOUND when detecting QtAssistant
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2006-07-27
Diane Trout
fix problems instantiating mussa.GlSequence
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2006-07-27
Diane Trout
make it possible to build mussa with python
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2006-07-26
Diane Trout
Use BOOST_PYTHON_LIBRARY as python library guard
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2006-07-22
Diane Trout
universal ld wrapper script
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2006-07-21
Diane Trout
Build universal binaries on OS X
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2006-07-15
Diane Trout
Provide an app icon on OS X
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2006-07-15
Diane Trout
include images used for bioinformatics journal club...
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2006-07-13
Diane Trout
start the trivial sequence filter
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2006-07-11
Diane Trout
ignore another build name
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2006-07-11
Diane Trout
update os x building tools
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2006-07-11
Diane Trout
Test for RST2HTML and BOOST_PYTHON_LIB
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2006-07-11
Diane Trout
fix spelling error
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2006-07-10
Diane Trout
Presentation for bioinformatics club.
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2006-07-08
Diane Trout
start of presentation for bioinformatics journal club...
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2006-07-06
Diane Trout
Empty Subanalyses should not be run
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2006-07-06
Diane Trout
Write cmake scripts for building the html manual
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2006-07-05
Diane Trout
SequenceLocationModel::clear should actually clear...
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2006-07-05
Diane Trout
remove MotifDetail:: from function in class declaration
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2006-07-01
Diane Trout
SequenceLocation was being intialized with left,right
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2006-07-01
Diane Trout
make sure subsequences have a species name
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2006-07-01
Diane Trout
make subanalysis window editable
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2006-07-01
Diane Trout
Implement UI for subanalysis mode
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2006-06-30
Diane Trout
fix boost::python sequence interface
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2006-06-30
Diane Trout
store motifs as sequences instead of strings
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2006-06-30
Diane Trout
Allow disabling motifs
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2006-06-30
Diane Trout
move edit motifs to the edit menu option
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2006-06-29
Diane Trout
set_motifs should erase the previous motifs
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2006-06-29
Diane Trout
allow specifying a name for a sequence
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2006-06-29
Diane Trout
update the annotation grammer to make species name...
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2006-06-29
Diane Trout
view sequence alignment is a more biologically useful...
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